Clone Read LE_HBa0138D18_SP6_70450

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138D18_SP6_70450
Primer
SP6
ID from Seq. Facility
LE_HBa_138_D18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1497 raw
Sequence
>LE_HBa0138D18_SP6_70450 (raw untrimmed)
ATAGTGATGTGGCGTTGGATAGATGAGGTAGTCTGATAAGAGGGTNTAGTGTGTTATANTGGTNGCGGTCGGGATGGTATAGTGAGATAGAGAGTATATT
TGTAACATAAGAAGACTGTGAGATATACGATGAGAGAAGATATGGCTGATACATCCCTTTATATTAGAAGAGTAGAGAGANGNTGAGANNATGTGTGAAT
GTAGAGAAAGGAAGGAAGANGNTAGAATGAGAGTGTACTCCTGTATTAGAAGGAGAGAGAGANGATATAGTAGGTATTGTAGTTGNCAGTANTNGTAGAN
GGATATTATAGTTGGAAGGATGGTTGATATATTGGATGTGGTATGAATAGTGTAGGCGTGGCTGGTGAGTGTGTGTGTATAGAGTTATTTCCTCCATAGA
GGNAGGAGGGANGGNAGTAGTGATGGTTGATATTATTTGGAAGATAGCATAGTAGAAGATATATGCGATAATGATGAGTATGATGAGAGGATGAGANGTA
TATATGAAGTAGGATGGGAGNANGAGAGGAGNTGACGGGCGACGGTGGAGATNGNGTAGATGANGTAGAAGGCAGGTGCAGTGATGAGGATGGAGAGTAT
GAGCGTTTAGTTATTGAGGTTGGACGTGTGTAGGGTTGATATAGTTGAACTGTATAAGATGGGTGATATGAGATGGATCACATAGGCATATGTTGTCTTC
GAATTAGTGATANAGTTGTAGTAGATAGATATCATCGATAGTGTGATATCTATGTTGATGTAATATAATATAGGATATGTAGTAAGATTAATTAAGGTGT
ATACGAAGATTGTGTGGGTTAGGTGAGGTGGAATGTATAAGTGTTGTGCGTAGGAGTGTCGGTGGGCGATTGTAGATGAGAGNTATGTTGTTGAAGTGAG
CGGGTGTGTGATTGTGGAGGTGTGGTATGAGAGCGATGAGTGTGTTTGGTGTTGTGGTAGGGAGGTAGTAGGTGCGGAATGTGGGGTAAAATGTACTATT
AGAGGATGTGGGTAGATGGTGTAGAAGATGGAGATAGAGGGAGAGGGGGAGAATGAGTGAAGTGGTGAGGGTGAGGATGATGGTGATATAAATGATAATG
AATGAATATATATGATGTGTAGTAAGTGGCTGTTTTATGTTGTGTATTGATAAATGTGGTNGGATTAATGTTGTGTTGCGAGAGGTTAGGTAGTGATGAA
GATGTTAGTATAAGGAGGTATAAATGTAAGTAATTATTATAGAAAATATAGATGAAAGTAAAAATATGGATAATTAGTGAGAGACATAAGATATAAATAT
GTTAGTATNGAGTATTGAAATATAGAGATATTATGTGATATGAAGGATGAATACTGGATGAGGGGTGATAATCGTAGGAGTGAAATTATGGAAATGCAAG
AATGGAGTGGCGATGAATATGAAGATGATGATCTATAATTTATAATAAAGGTATATATACATAAGTCAGAAAAGTTAGATGATTGGATAGTGGTGGA
>LE_HBa0138D18_SP6_70450 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.22223
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138D18
Clone
Clone name
hba-138d18
LE_HBa0138D18
P138D18
Clone type
BAC
Contamination
none
Estimated length
109,126
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found