Clone Read LE_HBa0138N04_SP6_70902

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138N04_SP6_70902
Primer
SP6
ID from Seq. Facility
LE_HBa_138_N04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
646 trimmed for vector and quality, 794 raw
Sequence
>LE_HBa0138N04_SP6_70902 (raw untrimmed)
GGCTTGCACAAGATATGAATGTTGAGTTAACTCAACCCCTTTGTTAGCAAATCTGCGAGTTGTTGTTGAGTATGAACATGAACTGTGTTAATAACCTTGG
CTTTGATCTTATCTCTAATGAAGTGACAGTCAATTTCAATGTGTTTTGTCCTCTCGTGAAAAACTGGATTTGCTGCAAGTTGTATTGCAGATTTACTATC
ACTAAACACAAGAATCGGCATGTGGATTTTCACACCTAGATCAGTAAATAACCCCAATAGCCAAGTAACTTCAGATACAGCTGATGCCATGCTTCTATAT
TCAGCCTCAGTTGAGATTCTGGAAACAGTATGTTGTTTCTTTGATTTCCAGGATACAAGTGATTCTCCAAACTTGACCACATATCCTGTGATAGATCTCC
TAGTATTAGGACAGGCAGCCCAATCAAAATCACACCAACATGATAACTCATTAGCAGGTTTAGATTGTAGCCATATTCCTTGACCAACTGTTCCTTTAAG
ATACTTAATTACTCTCATTGTTGCATCCCAATGTGATCTCTTGAGAGCTTGTATAAACTAGCTCAGAACTTGTACTGCATAGCTAATGTCTGTCCTGGTA
ATAGTAGCATATAGGAGATTTCCAATCACCCTTTGATAGGTTGTGATATCTTGTAATATAACATCTACAGTATAGTCATTATCCTGATCATATTCTACTG
ATGTTAATTAGAGATTTGATTCAATAGGAATTGGTGGAAGGTTTTGCACCTGTTAGATTCAGAAATAAGTTCTAACACTTATTTTCTTTCATTC
>LE_HBa0138N04_SP6_70902 (trimmed for quality and cloning vector)
TGTTGAGTTAACTCAACCCCTTTGTTAGCAAATCTGCGAGTTGTTGTTGAGTATGAACATGAACTGTGTTAATAACCTTGGCTTTGATCTTATCTCTAAT
GAAGTGACAGTCAATTTCAATGTGTTTTGTCCTCTCGTGAAAAACTGGATTTGCTGCAAGTTGTATTGCAGATTTACTATCACTAAACACAAGAATCGGC
ATGTGGATTTTCACACCTAGATCAGTAAATAACCCCAATAGCCAAGTAACTTCAGATACAGCTGATGCCATGCTTCTATATTCAGCCTCAGTTGAGATTC
TGGAAACAGTATGTTGTTTCTTTGATTTCCAGGATACAAGTGATTCTCCAAACTTGACCACATATCCTGTGATAGATCTCCTAGTATTAGGACAGGCAGC
CCAATCAAAATCACACCAACATGATAACTCATTAGCAGGTTTAGATTGTAGCCATATTCCTTGACCAACTGTTCCTTTAAGATACTTAATTACTCTCATT
GTTGCATCCCAATGTGATCTCTTGAGAGCTTGTATAAACTAGCTCAGAACTTGTACTGCATAGCTAATGTCTGTCCTGGTAATAGTAGCATATAGGAGAT
TTCCAATCACCCTTTGATAGGTTGTGATATCTTGTAATATAACATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958368
Expected error %
0.0963592
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 180 E Value 5e-46 Identity 15.80% Align. Length 542bp (83.90%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 256 E Value 3e-67 Identity 19.00% Align. Length 635bp (98.30%) Frame 3
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10743.1| Score 228 E Value 1e-58 Identity 17.40% Align. Length 626bp (96.90%) Frame 3
retroelement pol polyprotein-like [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138N04
Clone
Clone name
hba-138n4
LE_HBa0138N04
C08HBa0138N04
P138N04
Clone type
BAC
Contamination
none
Estimated length
72,507
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found