Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0146C14_SP6_71930

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0146C14_SP6_71930
Primer
SP6
ID from Seq. Facility
LE_HBa_146_C14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
688 trimmed for vector and quality, 843 raw
Genbank Accession
DU064661
Sequence
>LE_HBa0146C14_SP6_71930 (raw untrimmed)
GTTATCCGGGTCTACTGGTCAACTCACTACTCTAGATGGAAGGAACTTAACAATTCCAATCAACAACGTGATTCAACCAAATTATGAACATATCGTCCCA
GGTGAAGGCATGCCGCTTCCAAAAGATCCGTCAAAGAAAGGGAATTTGAGGATCAAGTTTGACATCAAGTTCCCTGCTCGTCTCACTGTGGCTCAGAAAT
CTGGTATCAAAGAGCTGTTGGGTATCATGAGATAGTGTCTTAAAACACAAACTTAGATACAATTTTTTTGTTAATTAGTTGTCAATATACAAAACCATTA
AATTAAGTATTGTATATAGTATATTCCACGTGAGTAATTGTATATAGTATATTGCATGTTTATGTTATTTTTGGTTTTTGTATATATATACAAAATAGTA
ATTGGACTTAGTTATACAGATGGAAAATTTGAATATATGATTAGAATTTGTATATTCTATTAGTTATATACAAACTTTTGAAGTTAGTATATATTAAGTT
TACATACATATACAAAAATTGATATGTACATGTCTGTTTTAATAGCTAGTAGTAGGGATTGTATATAGATGGGGAAATATCATATGTGATTATAATTTTG
TATATTGTAGTAGTTATATATAAATTATCGAATATAATGTATTGAATATGCATATACAATTAATAAAAACATTGAATAATTGTTTAGTATATACTATATA
CAATTTAAAAACCTGAATTACATATATCTCTTGTTATACAAATTTTGTAAAAATGCATTTTTTGTACATGTAATTATTTATTCCATTAGATTGTAATATG
TTATATTTATAGCAATCTTTATTGTATTTGATCTTATAATAAT
>LE_HBa0146C14_SP6_71930 (trimmed for quality and cloning vector)
TCACTACTCTAGATGGAAGGAACTTAACAATTCCAATCAACAACGTGATTCAACCAAATTATGAACATATCGTCCCAGGTGAAGGCATGCCGCTTCCAAA
AGATCCGTCAAAGAAAGGGAATTTGAGGATCAAGTTTGACATCAAGTTCCCTGCTCGTCTCACTGTGGCTCAGAAATCTGGTATCAAAGAGCTGTTGGGT
ATCATGAGATAGTGTCTTAAAACACAAACTTAGATACAATTTTTTTGTTAATTAGTTGTCAATATACAAAACCATTAAATTAAGTATTGTATATAGTATA
TTCCACGTGAGTAATTGTATATAGTATATTGCATGTTTATGTTATTTTTGGTTTTTGTATATATATACAAAATAGTAATTGGACTTAGTTATACAGATGG
AAAATTTGAATATATGATTAGAATTTGTATATTCTATTAGTTATATACAAACTTTTGAAGTTAGTATATATTAAGTTTACATACATATACAAAAATTGAT
ATGTACATGTCTGTTTTAATAGCTAGTAGTAGGGATTGTATATAGATGGGGAAATATCATATGTGATTATAATTTTGTATATTGTAGTAGTTATATATAA
ATTATCGAATATAATGTATTGAATATGCATATACAATTAATAAAAACATTGAATAATTGTTTAGTATATACTATATACAATTTAAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.908113
Expected error %
0.378778
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g08910.1 Score 106 E Value 1e-23 Identity 24.50% Align. Length 191bp (27.76%) Frame 1
68416.m01037 DNAJ heat shock protein, putative similar to SP|P25685 DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) {Homo sapiens}; contains Pfam profile PF00226: DnaJ domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g01390.1 Score 106 E Value 1e-23 Identity 24.10% Align. Length 194bp (28.20%) Frame 1
68418.m00052 DNAJ heat shock protein, putative similar to SP|Q9QYJ3 DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) {Mus musculus}; contains Pfam profile PF00226: DnaJ domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC16088.2| Score 131 E Value 2e-29 Identity 31.80% Align. Length 197bp (28.63%) Frame 1
DnaJ like protein [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF05720.1| Score 127 E Value 3e-28 Identity 29.30% Align. Length 197bp (28.63%) Frame 1
DnaJ-like protein [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0146C14
Clone
Clone name
hba-146c14
LE_HBa0146C14
P146C14
Clone type
BAC
Contamination
none
Estimated length
95,548
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found