Clone Read LE_HBa0033O18_SP6_7234

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033O18_SP6_7234
Primer
SP6
ID from Seq. Facility
LE_HBa_033_O18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
789 trimmed for vector and quality, 937 raw
Genbank Accession
DU026593
Sequence
>LE_HBa0033O18_SP6_7234 (raw untrimmed)
AACTCAAGGCTGATGCTAAACTTTGCGAAAAGGCAATAAAAGTTGAAATTGATTCTATTATGAAAACTAAAACATGGATTTTGACTGATTTGCCTTCTGC
TGCAAAACCTATTGGTTGTAAATGGATCTTCAAAACGAAACTTAATCCTGATGGATCTATAGATAAATATGAAGCGCGTTTAGCAACAAAAGGATTTTCT
CAAAAACCAAATATTGATTATTTGATACATTTGCACCGATGACTAGAATTTCTTCTATTCGAATGTTAATTGTCTTAGCATCAATTCATAAGCTTTTTAT
TCATCAAATGGATGTACAAACAACTTTCTTAAATGATTACTTAGAAGAAGCAATTTAAATGGTTCCACCTGAAGGATGTATTACTCATGGAAAAGAAAGT
AAAGTTTTTAAGTTAATTAAATCTCTTTACGGCCTAAAACAAGCTCCTAAACAGTAACATGAAAAATTAGATCAATTCTTGTTGAAAATATTTTTTCTTC
TGTTGAACTTGATAAATATGTTTATGCCAAAATCGTAGACAATGATTATGTAATAATATGTTTATATGTTGATGACATGCTTATATTTGGTACAAGTTTA
AATATTGTGAATAGTGCTTATTTTTGTTTGCAAATTTTTATATGAAAGATATACATGAAGTAAATATGATTTTAGGAGTTAAGGTAATAAAGAAGATGAT
ATAATGTTGTCTCAAGAACATTCTGTGGAAAGACTCCTTAAATTTTTTGAATGTTTTGAGGTGACACCTGTAACCACTCCTTATGATGCTAATTCTAAAT
TGAAAAACAATTATGGTGATCCAGTTGCTCAGTCTAAATATGCTCAAATTATTGGAGTTTATTATATTTGATGTGTTTTACAGACCTGATATTGCGTATG
CTGTTTTTAGAATGAGTAAAATACTCATAATCAATAA
>LE_HBa0033O18_SP6_7234 (trimmed for quality and cloning vector)
GGCAATAAAAGTTGAAATTGATTCTATTATGAAAACTAAAACATGGATTTTGACTGATTTGCCTTCTGCTGCAAAACCTATTGGTTGTAAATGGATCTTC
AAAACGAAACTTAATCCTGATGGATCTATAGATAAATATGAAGCGCGTTTAGCAACAAAAGGATTTTCTCAAAAACCAAATATTGATTATTTGATACATT
TGCACCGATGACTAGAATTTCTTCTATTCGAATGTTAATTGTCTTAGCATCAATTCATAAGCTTTTTATTCATCAAATGGATGTACAAACAACTTTCTTA
AATGATTACTTAGAAGAAGCAATTTAAATGGTTCCACCTGAAGGATGTATTACTCATGGAAAAGAAAGTAAAGTTTTTAAGTTAATTAAATCTCTTTACG
GCCTAAAACAAGCTCCTAAACAGTAACATGAAAAATTAGATCAATTCTTGTTGAAAATATTTTTTCTTCTGTTGAACTTGATAAATATGTTTATGCCAAA
ATCGTAGACAATGATTATGTAATAATATGTTTATATGTTGATGACATGCTTATATTTGGTACAAGTTTAAATATTGTGAATAGTGCTTATTTTTGTTTGC
AAATTTTTATATGAAAGATATACATGAAGTAAATATGATTTTAGGAGTTAAGGTAATAAAGAAGATGATATAATGTTGTCTCAAGAACATTCTGTGGAAA
GACTCCTTAAATTTTTTGAATGTTTTGAGGTGACACCTGTAACCACTCCTTATGATGCTAATTCTAAATTGAAAAACAATTATGGTGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.914111
Expected error %
0.0408467
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 71 E Value 8e-25 Identity 37.70% Align. Length 552bp (69.96%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR13298.1| Score 156 E Value 5e-60 Identity 48.50% Align. Length 787bp (99.75%) Frame 3
gag-pol polyprotein [Phaseolus vulgaris]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP94586.1| Score 115 E Value 7e-44 Identity 38.50% Align. Length 787bp (99.75%) Frame 3
putative retrotransposon RIRE1 poly protein [Zea mays]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033O18
Clone
Clone name
hba-33o18
LE_HBa0033O18
P033O18
Clone type
BAC
Contamination
none
Estimated length
121,600
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found