Clone Read LE_HBa0147J08_SP6_73022

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0147J08_SP6_73022
Primer
SP6
ID from Seq. Facility
LE_HBa_147_J08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1351 raw
Sequence
>LE_HBa0147J08_SP6_73022 (raw untrimmed)
TTAGGACTTACATTCGCTCACACAGCATATACACGGAGTCCTTACTCAATCTTCCCACAGATAAAGTTCAATTTCTTTTTAGAAGATATTCTCTCAAGAT
ACATGCATAGTACNTATAGGGATCTTGTGGCTAGTTCCACGCACTTTTATAATGCGATCGCGAAAGATCACTCCACTGGTATGACACTCGTAAGTGAGCA
TGTGATTNGCTTATATGTTATTCACTCGCAACATCATANTCGCCTACATCATGTTGCANGTGCTATCGCAATGACACAACAGTAAAAGTTAGTGTGTAGA
TACGCCGTGTAAGCTTGACANTGACATAAGTATGCATCACTATCCGTGAGCAAGCAGACTAGCATATCACCGCCGCAGCTCCTCAGCCACCGACGCCGCG
ACTCCACAAGACCCAGCCAATCCTATAATAATAAATATAAAGACGCANTGATACATGAAGCGTTGTATAGTATTGTACGTCATTTCTCTCCTATAGTTTA
ATTATTCTTGTATCTTGCATACGATAATGACTTGTGTTTAGTGGACTGTGGTGACATTGGCTTAATGTAAATTTTGCGCTTCTATCTCAATCTCGTAGTT
GATATTCTCGAGGGAAATATTACAGTGCATATTTACTNCACGTGCATATGGTTAGTTGTATTTGTCTGTAATAATCTATATTTCCTACCTCATATTTAAT
CTATCCACTGTGCGACTTCAGTGCCACATTGTTGTATAACTATTTATAGCCAGCTATTTTATATACATGTAAAAAGAATGTGTAGTAAATACTTTCGCAG
CTATTAGTATTCTTAGATATTCGATTTAGTATCTCAAAATGTTATCTAATATATANACTATATCGTCTATACAATTGCTGCTTANACAACTTTTGTGCAT
TTCTACTGAATTACCTTACTATCTGCTACTACCCTACTATAAGTCTAAGCTATGTATCTTTATCGCTCTATAGTCCTAATAAAATATACGTTTGACATAT
ACACTCCATGTGCTGCCCTTTGATGATTAGTATTCTCTTCGTCTTTTGTGACATTATCAGTCTTGGTGATCCCTACTGCTCTTATAGCTGAGTTACTCAA
CTACTTTTATATGATATCTCATTTGTATTTTTTATTATCATTCCGTTTCTCATTAATCTGTTTTTATAATATTTAGGTTATTTATCTAATTTACTTTAGT
TCTATGAGACTTGTTTATATTATCATGTATAACTCGTTCTTATATTTACTCTTTTCATGTGCTTATTACTTTGATATATACTGTATACAGGCCAGTCTAA
CATCATAACCTATCCTGTATTTATGTCTTCACTACTAGTCATCAAGTATTA
>LE_HBa0147J08_SP6_73022 (trimmed for quality and cloning vector)
TGA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.837005
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0147J08
Clone
Clone name
hba-147j8
LE_HBa0147J08
P147J08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found