Clone Read LE_HBa0034C21_SP6_7432

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034C21_SP6_7432
Primer
SP6
ID from Seq. Facility
LE_HBa_034_C21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
645 trimmed for vector and quality, 786 raw
Genbank Accession
DU026779
Sequence
>LE_HBa0034C21_SP6_7432 (raw untrimmed)
TGGGGGCATCGTTAGTTCCTTACATTGGGGCATGTGGTTTCCATTGAGGGGGTGATAGTGGATCCTTCTAAGATTGAGACAGTCCAAGAATTGGGTAAGA
CCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGTTTAGCTAGCTATTACCGTCGATTTGTCAAGGGATTCTCTTCCATTGCTTCCCAATTGACGAACT
TGACTAAGTAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAACTCAAGACCTTGTTGACTACTGAACCAATCCTTATCCTGCC
AGTGGAAGGTAAGAATTTCATTGTCTATTGTGATGCATCCTATTCGGGTTTGGGTGCAGTGCTAATGCAAGAGAAGAACGTAATTACTTATGCTTCAAGG
CAATTAAAGGTGCACGAATGTAATTATCCGACCCATGATTTGGAATTGGCTGCGGTAGTGTTTGCCTTAAAGCAATGGAGACACTATCGATATGAGGTTA
AGTGTGAAGTATACACGGATCATCGTTGCCTACAGTATGTCTTTACTAAAAAAGATTTAAATTTGAGACAGAGGAGATGGATGGAACTACTGAAGGACTA
CGATATCACTATCTTGTATCATCCGGGAAAGGCTAATGTTGTGGCAGACGCCTTAAGTAGAAAGGAAGGGAGCATGGGAAGTCTAGCTCACTTGCCAGTT
TCTAGAAGTCCATTGGCTAGAGAGGTTCAGACTCTGGCTAACGACTTTATGAGGTTAGAAGTAAATGAAAAGGGAGGATTGGTTGC
>LE_HBa0034C21_SP6_7432 (trimmed for quality and cloning vector)
GGGGTGATAGTGGATCCTTCTAAGATTGAGACAGTCCAAGAATTGGGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGTTTAGCTAGCTAT
TACCGTCGATTTGTCAAGGGATTCTCTTCCATTGCTTCCCAATTGACGAACTTGACTAAGTAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAA
GCTTTCAGAAACTCAAGACCTTGTTGACTACTGAACCAATCCTTATCCTGCCAGTGGAAGGTAAGAATTTCATTGTCTATTGTGATGCATCCTATTCGGG
TTTGGGTGCAGTGCTAATGCAAGAGAAGAACGTAATTACTTATGCTTCAAGGCAATTAAAGGTGCACGAATGTAATTATCCGACCCATGATTTGGAATTG
GCTGCGGTAGTGTTTGCCTTAAAGCAATGGAGACACTATCGATATGAGGTTAAGTGTGAAGTATACACGGATCATCGTTGCCTACAGTATGTCTTTACTA
AAAAAGATTTAAATTTGAGACAGAGGAGATGGATGGAACTACTGAAGGACTACGATATCACTATCTTGTATCATCCGGGAAAGGCTAATGTTGTGGCAGA
CGCCTTAAGTAGAAAGGAAGGGAGCATGGGAAGTCTAGCTCACTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971915
Expected error %
0.100772
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 291 E Value 2e-77 Identity 68.40% Align. Length 639bp (99.07%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 287 E Value 9e-77 Identity 67.00% Align. Length 639bp (99.07%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034C21
Clone
Clone name
hba-34c21
LE_HBa0034C21
C08HBa0034C21
P034C21
Clone type
BAC
Contamination
none
Estimated length
141,409
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found