Clone Read LE_HBa0157A18_SP6_75682

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0157A18_SP6_75682
Primer
SP6
ID from Seq. Facility
LE_HBa_157_A18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 1032 raw
Sequence
>LE_HBa0157A18_SP6_75682 (raw untrimmed)
GCTTGAATCCTCACTCCTTTAAGCAAATTTTATAACATCATAAGTTACTATTACTAACACTTGCCTACTCTTATACACCCCTTGTTATAAAACATGTATT
TTAAAATCCAAAATTCTAACGCTCCACACTTTTATATGACCATAGTATCTTTTCCTGGCGAAGCGCACGCTATGACACCTCCTGTGGATCCCGCCCCTGT
TAGGCAATGATTAAATAATAAATCTTACAATGGATTTCAATATAGTTAAAAGACTTAAAAGTAGCATCTCTCCCCCTATTATTATTTGTTAAACTTCTAA

ATATTACTTGTATTTAAGTCAATATTGTTAGTTCTCTTGGCTAAATAGACCATAAACGAAAATACTATTATGAAGTCCGTTTAGGATTTCCTAGTTCACG
CGTGTGCCCAACGTGAGGTCATACTCTGCTAAAGTCCCAGCTTCCTAGGGTGAGATCCAACTCGTAATCGCCAATGAGACATTACATACATTTCGACATA
TTCTTTTTTCCCCCCCCCAGATTGATTTGTTAGAGTGAAAAGAAGCGGTAAGAGATAATATGTATAAATTGTGTGGTTGATGAAGTTGGAGAAATATGGA
TCTATCTATCGTGAGTAGCTTCTCGACGGGTTTAAAACTTTTAATTCTTCTAATTGTTTGTATCTGTGAGAATTCGTTTTTTTTGTTATTGTTTTATGTT
TTATTATTTTTCGGAGGAAATGTAAGTTTCGTTATTTTTGTTAGGTTGTGCGACACGGGGCGACATTTTTAATATAAGCGGNCGTACGGACGGGGCGTCT
CAGCCCCCCACACGCGGTGTGTATGGTTTGCTGTTGCGGCTTGTTCGTGGTTTCTTATTTTTTTTATTTTTTTTTTCTTTTTTTTTTATTTTTTTTTTTT
TATTTTCGCCCCCCCCCCCTTTTTTTTTCTTTTCTTTTATTTTTCGGCGCGCGGGCTCTGAGCTTATTTTTTTTTTTACCCCCCCCACCTGCTTATTTTT
TTTTTTTTTTATATTTTTTTTTATTATTTTAT
>LE_HBa0157A18_SP6_75682 (trimmed for quality and cloning vector)
ATATTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.857774
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0157A18
Clone
Clone name
hba-157a18
LE_HBa0157A18
C08HBa0157A18
P157A18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found