Clone Read LE_HBa0157H24_SP6_76030

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0157H24_SP6_76030
Primer
SP6
ID from Seq. Facility
LE_HBa_157_H24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
395 trimmed for vector and quality, 788 raw
Genbank Accession
DU063172
Sequence
>LE_HBa0157H24_SP6_76030 (raw untrimmed)
AGTTTTTTACTTATGAACCAGATGTAGAAAAGTTATTTTGCACCGTCTTAAAAGATGCGAAATTACCAAAAGGGTGTGCTTCTAATATATCAAGTCGTGT
GCAAATTGAAGAGATGAAAGTATCAGGATACAACTGTTTCGATGCTCATTTCATAATGCATTACTTGTTCCAGGTTGCAGTCAGAAAAGTGTTAGCCAAG
AATGTAGCTATGGTCTTGATTAGATTGGGAAATTTTTTTAGAGCCACATGTAGCAAGGTTATAAGAAGAAGCGATCTTTATAAGATGAAAGCAGAAATCA
TATATTATTGAATGTGAGCATTGAAAAGATTTTTCTTACATCCTTTTTTGATATAATGACAGATTTACCTATCCATCTAGTAGATGAAATTAAGCCTGGA
GGGCCAACTCATTTGCGTTGGATGTATTCTACAGAGAGAACTATGTGTGAATTCAAGGGGCTTGTTCGTAATCTAAAAAATCCCGACGGTTCAATAGTAG
AACATTTTTCAGCTGTAAATTGTTTGAACGTTATTTTTATATATTTAGTTAAATGATGAAAATAAAATTAACTATGTGTGAAATAGAAGAAGAATAAATA
TATTNGAAAAAAAGGAAGGTAGGAGTTTAATATATATTTTCAAAAAAAAAAAATTAGAAAATGGAAGATAAAAAGAATAGGGAATAGAGAATGAAATTAA
TAAGATGGAAGTAGGCATGAAGTATATTAGTAAAATATAATATGTATTATGTCGTTGTATTTTATATTATTTATAATGTAATATATTA
>LE_HBa0157H24_SP6_76030 (trimmed for quality and cloning vector)
GCTTCTAATATATCAAGTCGTGTGCAAATTGAAGAGATGAAAGTATCAGGATACAACTGTTTCGATGCTCATTTCATAATGCATTACTTGTTCCAGGTTG
CAGTCAGAAAAGTGTTAGCCAAGAATGTAGCTATGGTCTTGATTAGATTGGGAAATTTTTTTAGAGCCACATGTAGCAAGGTTATAAGAAGAAGCGATCT
TTATAAGATGAAAGCAGAAATCATATATTATTGAATGTGAGCATTGAAAAGATTTTTCTTACATCCTTTTTTGATATAATGACAGATTTACCTATCCATC
TAGTAGATGAAATTAAGCCTGGAGGGCCAACTCATTTGCGTTGGATGTATTCTACAGAGAGAACTATGTGTGAATTCAAGGGGCTTGTTCGTAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949052
Expected error %
1.83411
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA40555.1| Score 70 E Value 1e-20 Identity 48.60% Align. Length 361bp (91.39%) Frame 2
TNP2 [Antirrhinum majus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||S23818 Score 70 E Value 1e-20 Identity 48.60% Align. Length 361bp (91.39%) Frame 2
hypothetical protein Tnp2 - garden snapdragon transposable element Tam1
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0157H24
Clone
Clone name
hba-157h24
LE_HBa0157H24
P157H24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found