Clone Read LE_HBa0034I06_SP6_7690

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034I06_SP6_7690
Primer
SP6
ID from Seq. Facility
LE_HBa_034_I06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
672 trimmed for vector and quality, 832 raw
Genbank Accession
DU026996
Sequence
>LE_HBa0034I06_SP6_7690 (raw untrimmed)
GTTAGCATACCCTATACTTAGGGGGCACGTNGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTAC
TAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACT
AAGCAGAATGTTCCATTTGTATGATCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAG
AGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGGTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGACAATT
AAAAGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGCTGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTTATATGGGGTTAAGTGT
GAGGTCTAGATGGATCATCGTAGCCTTCAGTATGTCTTTACTAAGAAAGATTTGAACTTGAGACAGAGAAGATGGATGGAACTACTGAAGGACTACGACA
TCACCATTTTGTATCATCCGGGGAAGGCGAATGTTGTGGCGGATGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAG
ACGCCCACTGGCTAGAGAGGTTCAGACTCTAGCTAACGACTTGATGAGATTAGAAAGTAATTGAAAAGGGAGGATTGTTGGGTAGTGGTGGAATCCAAAA
TTTCTTTTTCTGACAAAATAAAGGGGAAAAAG
>LE_HBa0034I06_SP6_7690 (trimmed for quality and cloning vector)
GGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGG
TTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGATCGGACG
AATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGC
ATCCTATTCTGGGTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCAACTCAT
GATTTGGAATTGGCTGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTAGATGGATCATCGTAGCCTTCAGT
ATGTCTTTACTAAGAAAGATTTGAACTTGAGACAGAGAAGATGGATGGAACTACTGAAGGACTACGACATCACCATTTTGTATCATCCGGGGAAGGCGAA
TGTTGTGGCGGATGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974773
Expected error %
0.202303
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 314 E Value 1e-84 Identity 23.30% Align. Length 656bp (97.62%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 314 E Value 1e-84 Identity 23.40% Align. Length 656bp (97.62%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034I06
Clone
Clone name
hba-34i6
LE_HBa0034I06
P034I06
Clone type
BAC
Contamination
none
Estimated length
99,442
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found