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Clone Read LE_HBa0164K01_SP6_77664

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0164K01_SP6_77664
Primer
SP6
ID from Seq. Facility
LE_HBa_164_K01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
549 trimmed for vector and quality, 790 raw
Genbank Accession
DU067302
Sequence
>LE_HBa0164K01_SP6_77664 (raw untrimmed)
AAATTCTCGGTTGTGCTAAGATCTTCTTGGAAGGATCTCTAGAAATGTGAAGTGAACTAAGCTCCTCTATCTGAAATGATAGACAAAGGAATCCCATGTC
ATCTCACAATCGCATCAATGTAGAGTCTCACATAATCCTTGGCTCTATAAGTACACTTTACATGGATAAACTTGGCAGACTTATTCTTCCTGTCCTTCAT
AACCCATATGGAGTCATTCTATCTCCTAGTCTTCGGAAGACCAACCACGAAGTCCATATTAATGGCCTCTCATTTCCTAGTCGGAGCCTCAATAATCTGA
GTAAGACCGCCAGGCTTAAGATGTTCTGCCTTAACCTGTTGACAATCAGGACACTTGGCCACATATTCTTCAATGAACTTCTTCATGCCATCCCACCAAT
AGATCTGCTTAAGATTATGATACATCTTGGTGGAACCTATATGTATAGAATTTCTGGAACCATGGGCCTGTGAAATGATCCTTGTCCGCAAATCATCCAA
ATCTGGTACACACAACCTGTCCTGGTACCTAAGTATATTGTCACCTCTCAAGGTAAAGGACACATTCATCCTTATCCAGCACTGAGTCCTCTTAACTCAT
CAAAACAGCATCAAGATGCTGACCATTTTTGACTTCAACTACTAAGGGACGATTCAAAAACTAGGATGAACTAAAACTCCTCTACTAGGAAAAGTAACTA
ACCGGCAACACCACGGCGGGCCAACACACGAAAATCCTTTCACCATTCTCTGCTCCCCCAGCTAAAATCGCGCTCTGTCCTTCCCCACAA
>LE_HBa0164K01_SP6_77664 (trimmed for quality and cloning vector)
TCTAGAAATGTGAAGTGAACTAAGCTCCTCTATCTGAAATGATAGACAAAGGAATCCCATGTCATCTCACAATCGCATCAATGTAGAGTCTCACATAATC
CTTGGCTCTATAAGTACACTTTACATGGATAAACTTGGCAGACTTATTCTTCCTGTCCTTCATAACCCATATGGAGTCATTCTATCTCCTAGTCTTCGGA
AGACCAACCACGAAGTCCATATTAATGGCCTCTCATTTCCTAGTCGGAGCCTCAATAATCTGAGTAAGACCGCCAGGCTTAAGATGTTCTGCCTTAACCT
GTTGACAATCAGGACACTTGGCCACATATTCTTCAATGAACTTCTTCATGCCATCCCACCAATAGATCTGCTTAAGATTATGATACATCTTGGTGGAACC
TATATGTATAGAATTTCTGGAACCATGGGCCTGTGAAATGATCCTTGTCCGCAAATCATCCAAATCTGGTACACACAACCTGTCCTGGTACCTAAGTATA
TTGTCACCTCTCAAGGTAAAGGACACATTCATCCTTATCCAGCACTGAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.969274
Expected error %
1.46064
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 226 E Value 3e-58 Identity 20.30% Align. Length 521bp (94.90%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 224 E Value 7e-58 Identity 20.10% Align. Length 521bp (94.90%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0164K01
Clone
Clone name
hba-164k1
LE_HBa0164K01
P164K01
Clone type
BAC
Contamination
none
Estimated length
86,269
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found