Clone Read LE_HBa0166D06_SP6_78106

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166D06_SP6_78106
Primer
SP6
ID from Seq. Facility
LE_HBa_166_D06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1696 raw
Sequence
>LE_HBa0166D06_SP6_78106 (raw untrimmed)
GCGAACGCTCACCACACCGCGTATTGTGCCTCATACTCCTCCGATCATCCTCCCCTTCTCTCCTCTGTACCCATTANTCTCTATACTTATATCTCNATAT
TTATCTACATNACTCACCNATTATATATATATTATTTTNATACANANACCTTCCCTCCTCGTATAAGAGAGTATACATCAGANATATGATCAGATTCTAT
TTATTAAAGAGTGTGACANTGCTGATACGCTGTGAGGAACACTCATACTTATACGTGTCTGTACTGTANTGCTTGTTTATCAATGAGCNTAAGCTGTTAC
AAGTAGTATTCTATCGGTAGCACACACGTATTTATACTTACTCAAGTACTTAGCGTCAGACGATACCAAATATTGACATATAGAGGNTAGGGGGNGTTGC
NCTCTCAGTGTACTTNATCTTCTNTAAACATACATATAGTCACTCCAATGTACTCACGCTGCNACTGATCCGCAGTTATACAGAGTCANATACTGTATCT
CAGATGATAGGCTTTCTGATGTNTAGTTTACTTATATCTTCTATACTTACANGATCTATTACATCAGCGCAGATATATATACTGTCANANAGCTAGTATG
GNTCANGCTCACNATACACTGTTTCACAGAAGCTGTNACACTATATATATNAGGACTATGTATATGATATTAGACAACCTCTNACACCTACGCGCACGNC
CACACTATCTCGCTCACATAGTAGATCATCTTTCAAGTGACTNTCTTGCTATCGCTCATATGCTGTAGATAGACTATACTATCACTGCCCGTCACTACTA
CCNATANANGCGCTACNCCATAGCGTACAATATATATATACGCACAACAACTCTCGCAGACTATTACTTCTGTTATCGTATTATATAGAGATCTCGAGCG
ATGTCTACAGTAATGTCCTGCTAAACTTAANTCTGTGGTAGTGTCTAAGCTAGTAATATTCGCATTCAATGTTANATTTATGCAACTCTCGTTAGACATC
AACCCAGATGTTATCGCATCTCTAACTACGAGCNATTCATGTCCGTGAACACTAACAAGGACTATTCCTAGTATCCCTCCATGTTTGTGTGTTTACTACT
TTATGCTCCTCAGCCTACTTGATCGACCCCGCTAGAGAATGTCTAGTGCAATGTCAATCTCCTGCAGTNACTTACTTTGCTCATAGTCCCCTAAATATCA
CCTATGTATACTCTAACATCTCGTCTACTTCTACATACGTACATATCTTTCATTACCTATTCTCTCGTGCGCACCCCAGCGACTACGTCTCTGNTCTCTN
TATCTAATTAATCTTCTTGTCTCTNCCATACTACTATCGACTATGCTTGTCTTTCGTACTGTGCCTATAGTACTGCTTATTNATATANCTTGCTGCGTAA
TATATTCTGCTATAAGTGAATAGTCCTTTTATGTTTATGTAGATAAATATGCACCAATGCTCGATTTGTCTCAAGTTATCTGCTTCTATATTTACTGNAT
ACACACTGATACTTGTGTTGTTATCTTACTACGCTCTCTCCTATGGTATANTAACNCNGTCTATATATGTTTNCNTACTCTGTCATGTGTGCGCTGCGCT
TAGTAGTGGTCTTCCTTACTTTATGCATGTGCCTACATAACATGTGCNGATAATTCTTGTATATGAGCAACGGACGTGCGTCGCACGTAGCTATNC
>LE_HBa0166D06_SP6_78106 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166D06
Clone
Clone name
hba-166d6
LE_HBa0166D06
P166D06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found