Clone Read LE_HBa0166J24_T7_78431

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166J24_T7_78431
Primer
T7
ID from Seq. Facility
LE_HBa_166_J24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
638 trimmed for vector and quality, 757 raw
Sequence
>LE_HBa0166J24_T7_78431 (raw untrimmed)
GCCTCGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTAGCGGCTCAAAGTAGACAGAAGGAGTATGCAGATCGGAAGGTTAGAGA
CTTGGAGTTTATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCAAAGGTACATT
GGACCATTTGAAGTACATAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCTAGGGCTGTTCGGAGTACATCCGGTATTCCATGTGTCGATGT
TGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTCGA
TAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCATGACCAGTTGAAGAAGCCACTTGGGAGAAGGAGGCAG
ATATGCAAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTCTCGCCCTTGTTTTTCTTCTTGTGATCGCTCGGGGACCAACGATGGGTAAAT
TGGTATCTATTGTAACGACCTGTTTAGTCGTTTTTGAGCAGCAGATTTTATTCTGGAAAAACAGGCTAAGGCGACGGACCCCACGTATTGACCGTCTTGG
CCACGACGGACCGTCATGGGCACGACGGACCGTTATTGGCACAAACGAACCGTCCTA
>LE_HBa0166J24_T7_78431 (trimmed for quality and cloning vector)
AGCTTCTAGCGGCTCAAAGTAGACAGAAGGAGTATGCAGATCGGAAGGTTAGAGACTTGGAGTTTATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACC
AATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCAAAGGTACATTGGACCATTTGAAGTACATAAGCGAGTAGGAGAGGTGGCTTATGAG
TTAGCCTTGCCTCTAGGGCTGTTCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATT
CAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTCGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAA
GGTGCAATGGAAGAATCATGACCAGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCAAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTC
CTTCTCGCCCTTGTTTTTCTTCTTGTGATCGCTCGGGGACCAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTTGAGCAGCAGA
TTTTATTCTGGAAAAACAGGCTAAGGCGACGGACCCCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967206
Expected error %
0.491192
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 170 E Value 2e-47 Identity 59.40% Align. Length 496bp (77.74%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 170 E Value 2e-46 Identity 59.40% Align. Length 496bp (77.74%) Frame 1
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166J24
Clone
Clone name
hba-166j24
LE_HBa0166J24
P166J24
Clone type
BAC
Contamination
none
Estimated length
132,220
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found