Clone Read LE_HBa0034L18_SP6_7858

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034L18_SP6_7858
Primer
SP6
ID from Seq. Facility
LE_HBa_034_L18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
673 trimmed for vector and quality, 803 raw
Genbank Accession
DU027148
Sequence
>LE_HBa0034L18_SP6_7858 (raw untrimmed)
CCGGGGTGTAGCATTTTNGTTATNCTNNCCTTTGCTTCAATCTACTATTTAGTTGACACAACACAAGGCTTTGTTTAAATTCTTTTCAAAATATGATAAC
ACAACCTACCCTAAGCAAATCTAAGCTCACCTGTAGTTTTTTCACTCCCCTCTAAATCACAGATATGTACTTCCACTATTGAGTCGTTTCAACTGTAGTT
TCTTTCTTATGTTTCCTTTTTGATCTCTTCCCTTGCAGGCTCTTTCCAATGGAAAGCCTACTGTTGTGGAATTCTATGCCGATTGGTGTGAAGTTTGTCG
AGAATTAGCTTCAGATGTCTATAAAGTTGAACAGCAGTACAAGTAAATCTCTTTTTTGTTATTGACTCCTGATAACCAACTCTTGTTCCAATCAATATAA
TAGAGTTGTCTTTTAGGTTTCCTTTTCAGCGAAAAATTTCCATTTTTTCACTAGTATGTGCATGTTTGAGTCTTTGCTTGTTCTTTGAAGCATGTGTTAG
AGTTAGCAATATGCATAGCATAAGTCCATGAACAATTTAAGTTAAGAAGGTTCATGCTCTTGTCTATCGGGGACAGTCTGTTTATATCTCACCCTCCCTA
ACCCCTCTTGTGAGATCACACTGGTTATTGCCGTTGTTGTTGTTAAGGTTCATATTGTTAATGCAGGGACCGCGTGAATTTTGTTATGTTGAATGTGGAT
AACACGAAGTGGGAACAAGAGCTCGATTAGTTTGGAGTCGAGGGCTTCCCCCATTTTCCTTCCTGGAAAAAGACGGAAAGGAAGAAAGGAATGTTGTTGG
GCC
>LE_HBa0034L18_SP6_7858 (trimmed for quality and cloning vector)
TTTGCTTCAATCTACTATTTAGTTGACACAACACAAGGCTTTGTTTAAATTCTTTTCAAAATATGATAACACAACCTACCCTAAGCAAATCTAAGCTCAC
CTGTAGTTTTTTCACTCCCCTCTAAATCACAGATATGTACTTCCACTATTGAGTCGTTTCAACTGTAGTTTCTTTCTTATGTTTCCTTTTTGATCTCTTC
CCTTGCAGGCTCTTTCCAATGGAAAGCCTACTGTTGTGGAATTCTATGCCGATTGGTGTGAAGTTTGTCGAGAATTAGCTTCAGATGTCTATAAAGTTGA
ACAGCAGTACAAGTAAATCTCTTTTTTGTTATTGACTCCTGATAACCAACTCTTGTTCCAATCAATATAATAGAGTTGTCTTTTAGGTTTCCTTTTCAGC
GAAAAATTTCCATTTTTTCACTAGTATGTGCATGTTTGAGTCTTTGCTTGTTCTTTGAAGCATGTGTTAGAGTTAGCAATATGCATAGCATAAGTCCATG
AACAATTTAAGTTAAGAAGGTTCATGCTCTTGTCTATCGGGGACAGTCTGTTTATATCTCACCCTCCCTAACCCCTCTTGTGAGATCACACTGGTTATTG
CCGTTGTTGTTGTTAAGGTTCATATTGTTAATGCAGGGACCGCGTGAATTTTGTTATGTTGAATGTGGATAAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948849
Expected error %
0.200775
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g37200.1 Score 80 E Value 8e-16 Identity 26.20% Align. Length 140bp (20.80%) Frame 3
68417.m05266 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; identical to cDNA thioredoxin-like protein (hcf164 gene) GI;12049652
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP50950.1| Score 81 E Value 3e-14 Identity 27.00% Align. Length 140bp (20.80%) Frame 3
putative thioredoxin [Oryza sativa (japonica cultivar-group)] ref|XP_469911.1| putative thioredoxin [Oryza sativa (japonica cultivar-group)] gb|AAR87322.1| putative thioredoxin-like protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB16778.1| Score 80 E Value 4e-14 Identity 26.20% Align. Length 140bp (20.80%) Frame 3
thiol-disulfide interchange like protein [Arabidopsis thaliana] emb|CAB80386.1| thiol-disulfide interchange like protein [Arabidopsis thaliana] emb|CAC19858.1| thioredoxin-like protein [Arabidopsis thaliana] gb|AAM19942.1| AT4g37200/C7A10_160 [Arabidopsis thaliana] gb|AAL77678.1| AT4g37200/C7A10_160 [Arabidopsis thaliana] ref|NP_195437.1| thioredoxin family protein [Arabidopsis thaliana] pir||E85439 thiol-disulfide interchange like protein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034L18
Clone
Clone name
hba-34l18
LE_HBa0034L18
C10HBa0034L18
P034L18
Clone type
BAC
Contamination
none
Estimated length
92,676
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found