Clone Read LE_HBa0166O19_T7_78661

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166O19_T7_78661
Primer
T7
ID from Seq. Facility
LE_HBa_166_O19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
695 trimmed for vector and quality, 779 raw
Sequence
>LE_HBa0166O19_T7_78661 (raw untrimmed)
CCTCGGTACCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGTTTTATCGATGGAACATGTACAAAGCATCAATACAGAGGAGAATTAGCT
GAATTGTGGGAGAAGTGCAATGCGATTGTGCTGTCATGGATTGGTTGTACAGTAGCAGCTGAGTTAATGCCAACTATCCTATATGCATCACATGCTAAAC
AAGTTTGGATTGAGTTCAAAGAGCGTTTTAATCGATTGAATCTGACGAGAATTTACCATCTCTGGACTGAAATTGCAACCTTAAGGCAAGGTATGGATCC
TGTAACTACTTATTATTCAAAATTGAAGGATGCATGGCATGAATTAGACATCATGGCACCATTACCACATTGTGATTGCGGGGAATCACGACTTTATCTG
GAGCAGTTAAGATCTCAACGATTGCTACAATTTCTTATGGGATTGAATGAAAGTTATAGTCAAATTCGAAGTAGCATTCTAGCTAGGAATCCAATTGTTA
CAGTAAATGAGGCCTATGCAATTGTATCACAAGAAGAGAGTCAAAGAACTTTAGGTGTTGTTGATGACAAGAAGGAGGTACTAACACTGCTAGCAGGTAA
GTCACAATCTTACAGGCCTAAGAAGGAATTGGATACTTCCAATAATTCTCAGAGATTTGATTTGTTTTGTGAGTACTGTGGGTATAGGAATCATAAAAAG
GATAATTGTTATCGATTGGTTGGTTATCCTCCTGGTTTTCAAAGTAAAAGGAGGGAAAAATTACAATGATGGATCAGTT
>LE_HBa0166O19_T7_78661 (trimmed for quality and cloning vector)
AGCTTGGTTTTATCGATGGAACATGTACAAAGCATCAATACAGAGGAGAATTAGCTGAATTGTGGGAGAAGTGCAATGCGATTGTGCTGTCATGGATTGG
TTGTACAGTAGCAGCTGAGTTAATGCCAACTATCCTATATGCATCACATGCTAAACAAGTTTGGATTGAGTTCAAAGAGCGTTTTAATCGATTGAATCTG
ACGAGAATTTACCATCTCTGGACTGAAATTGCAACCTTAAGGCAAGGTATGGATCCTGTAACTACTTATTATTCAAAATTGAAGGATGCATGGCATGAAT
TAGACATCATGGCACCATTACCACATTGTGATTGCGGGGAATCACGACTTTATCTGGAGCAGTTAAGATCTCAACGATTGCTACAATTTCTTATGGGATT
GAATGAAAGTTATAGTCAAATTCGAAGTAGCATTCTAGCTAGGAATCCAATTGTTACAGTAAATGAGGCCTATGCAATTGTATCACAAGAAGAGAGTCAA
AGAACTTTAGGTGTTGTTGATGACAAGAAGGAGGTACTAACACTGCTAGCAGGTAAGTCACAATCTTACAGGCCTAAGAAGGAATTGGATACTTCCAATA
ATTCTCAGAGATTTGATTTGTTTTGTGAGTACTGTGGGTATAGGAATCATAAAAAGGATAATTGTTATCGATTGGTTGGTTATCCTCCTGGTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.968082
Expected error %
0.0332847
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g21280.1 Score 110 E Value 1e-24 Identity 12.40% Align. Length 491bp (70.65%) Frame 1
68414.m02659 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 193 E Value 4e-48 Identity 15.00% Align. Length 692bp (99.57%) Frame 1
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89730.1| Score 154 E Value 2e-36 Identity 12.70% Align. Length 692bp (99.57%) Frame 1
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166O19
Clone
Clone name
hba-166o19
LE_HBa0166O19
P166O19
Clone type
BAC
Contamination
none
Estimated length
81,826
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found