Clone Read LE_HBa0034N01_SP6_7920

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034N01_SP6_7920
Primer
SP6
ID from Seq. Facility
LE_HBa_034_N01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
652 trimmed for vector and quality, 795 raw
Genbank Accession
DU027203
Sequence
>LE_HBa0034N01_SP6_7920 (raw untrimmed)
NTAAGGGTTAATCTTATTAACGTAGTTAGAAAAAATAAAAGTGAACCTCATCGCATAGATAAAAGAATAACTAACTAATTATTCATTTCACTGTGCTGTG
TGAATATGATTTCCTCATTACCACCCGAAAATCTAATAACGTTAGTGTTATTGATGATGGATCCCAATCGTTAACTAGTTAAAAGTTTTGAATAACATGG
TTACCTTTCATTCTGAGAATCTTTTTTTTAAGTTGCTCGGCGCAAGCCTCACAATGCATGTTGACATTAAGCTCCACAGTAGTCAATCCACTTACCTAAT
AAAAGCAAACATTATGATTCTTTAATTATATGAACAATCAATCAAAAAAAAAGTAGTATAACATGCCACAACAATTATACCTGTGAAGCAACCACTTGAG
GAATTGGTTCACCTTCAGCAGCCGGCAGGGGTGATAACACTTTTGCAACTCTTTTAGTTTTCTTCGTAATTCTGTCGCACACTGCTTGTGGCTCTATTAC
TCCCTTTATTGTCACTGTGTTTTTCGCCATTTCTATTACTACTCCCTCAACCCCTGCTCCAAGGTACACAAAATTAGGGTCGAGAGAGCTAAAGGGGATC
GAAAAATAACACTATACTATACTACATACACTTCCTGTTATGAAAATTCTGCCGCTGCGATATAAAAACATAGAAGGTATACAAACCTCTAATCTTTGAA
ATGGACCTCTCAATTTTCTTTGCACATCCAACACAATGCAAGTCAACGTACCAAACAAAAGGCGAAGGTGGTTTTGGCTCTGTTTGCTCTTCCTC
>LE_HBa0034N01_SP6_7920 (trimmed for quality and cloning vector)
ATAAAAGAATAACTAACTAATTATTCATTTCACTGTGCTGTGTGAATATGATTTCCTCATTACCACCCGAAAATCTAATAACGTTAGTGTTATTGATGAT
GGATCCCAATCGTTAACTAGTTAAAAGTTTTGAATAACATGGTTACCTTTCATTCTGAGAATCTTTTTTTTAAGTTGCTCGGCGCAAGCCTCACAATGCA
TGTTGACATTAAGCTCCACAGTAGTCAATCCACTTACCTAATAAAAGCAAACATTATGATTCTTTAATTATATGAACAATCAATCAAAAAAAAAGTAGTA
TAACATGCCACAACAATTATACCTGTGAAGCAACCACTTGAGGAATTGGTTCACCTTCAGCAGCCGGCAGGGGTGATAACACTTTTGCAACTCTTTTAGT
TTTCTTCGTAATTCTGTCGCACACTGCTTGTGGCTCTATTACTCCCTTTATTGTCACTGTGTTTTTCGCCATTTCTATTACTACTCCCTCAACCCCTGCT
CCAAGGTACACAAAATTAGGGTCGAGAGAGCTAAAGGGGATCGAAAAATAACACTATACTATACTACATACACTTCCTGTTATGAAAATTCTGCCGCTGC
GATATAAAAACATAGAAGGTATACAAACCTCTAATCTTTGAAATGGACCTCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964247
Expected error %
0.221546
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g24580.1 Score 89 E Value 5e-29 Identity 70.70% Align. Length 351bp (53.83%) Frame 2
68418.m02902 copper-binding family protein similar to copper homeostasis factor gi:3168840 from Arabidopsis thaliana; contains Pfam profile PF00403: Heavy-metal-associated domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g24580.2 Score 89 E Value 5e-29 Identity 70.70% Align. Length 351bp (53.83%) Frame 2
68418.m02903 copper-binding family protein similar to copper homeostasis factor gi:3168840 from Arabidopsis thaliana; contains Pfam profile PF00403: Heavy-metal-associated domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM65923.1| Score 89 E Value 2e-27 Identity 70.70% Align. Length 351bp (53.83%) Frame 2
unknown [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM91769.1| Score 89 E Value 2e-27 Identity 70.70% Align. Length 351bp (53.83%) Frame 2
unknown protein [Arabidopsis thaliana] gb|AAL59894.1| unknown protein [Arabidopsis thaliana] dbj|BAB11210.1| unnamed protein product [Arabidopsis thaliana] ref|NP_568449.1| copper-binding family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034N01
Clone
Clone name
hba-34n1
LE_HBa0034N01
C03HBa0034N01
P034N01
Clone type
BAC
Contamination
none
Estimated length
105,665
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found