Clone Read LE_HBa0037O17_SP6_80960

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0037O17_SP6_80960
Primer
SP6
ID from Seq. Facility
LE_HBa_037_O17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
575 trimmed for vector and quality, 816 raw
Genbank Accession
DU076299
Sequence
>LE_HBa0037O17_SP6_80960 (raw untrimmed)
AAAAAATTTCGACAATGCAATAAATCTCGCTCTCCCTATTTTCCTAATTGAGGTAACATAAAGACCATTCTGAAGCTGGAGAGACAAGGCAAGAAACTGG
CACCATGTTGAAACATAAATATAAAAGTAAACTTGTACACAAATAACAAGGCTAACCATAGTTAAAAGTCAAACTAAGAGTTAACAGCTAAAATGTCCCA
CAAGTGTTAAACCTACCATTTTGAATCAAATGAGTCGATTGAAGCAAGCCTGGTAACGCTATTAGCTTCAGAAGAGGATGGCGTACCACCATTTCCATCA
TTAGGTCTAGCTGAACCATCCCCTATATGTGAGGGATTCCATGAAGGATCATGATCTTCACCACTGGTACGAGTAGAGTGTCCCTGAAGATTTGATATAC
CCTATTAATACTTCTATAACTAATCAACTCTTTAAGAAAATTGAGATAAAGCTCAATAATAAAAACAAATTTCCATACTTTCGGCTCTGCAGCAAGCCGT
GGAGGAGTTTGTAACCTTAAATTGTCCCAATCAACTCCACTAAAGAAAGGATGGTTTTTCAGTGAAGCATAACCATCAGGTCCAGCACCTGGTCTTCGGC
TAGGATCAATATCCTGATTCATTTGGATGCAAGTTAGTTGGTAAAAGAGATTTTATGAAAGTACAAAAATATAGCCTTGTGTATTTTTTTGGTAATATAA
ACACAAAACATTTATGTGCCTCTTTTTACTTGGAATGAGAAATATTTTAAAAATTTTATTCTATCGAAAAAAAGAAAATGTTTTTCTTTTGCCTCCTGCA
TATTTTTGAAAAGGCA
>LE_HBa0037O17_SP6_80960 (trimmed for quality and cloning vector)
TTTCCTAATTGAGGTAACATAAAGACCATTCTGAAGCTGGAGAGACAAGGCAAGAAACTGGCACCATGTTGAAACATAAATATAAAAGTAAACTTGTACA
CAAATAACAAGGCTAACCATAGTTAAAAGTCAAACTAAGAGTTAACAGCTAAAATGTCCCACAAGTGTTAAACCTACCATTTTGAATCAAATGAGTCGAT
TGAAGCAAGCCTGGTAACGCTATTAGCTTCAGAAGAGGATGGCGTACCACCATTTCCATCATTAGGTCTAGCTGAACCATCCCCTATATGTGAGGGATTC
CATGAAGGATCATGATCTTCACCACTGGTACGAGTAGAGTGTCCCTGAAGATTTGATATACCCTATTAATACTTCTATAACTAATCAACTCTTTAAGAAA
ATTGAGATAAAGCTCAATAATAAAAACAAATTTCCATACTTTCGGCTCTGCAGCAAGCCGTGGAGGAGTTTGTAACCTTAAATTGTCCCAATCAACTCCA
CTAAAGAAAGGATGGTTTTTCAGTGAAGCATAACCATCAGGTCCAGCACCTGGTCTTCGGCTAGGATCAATATCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964245
Expected error %
0.208158
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g10540.1 Score 77 E Value 3e-26 Identity 53.70% Align. Length 397bp (69.04%) Frame 1
68416.m01265 3-phosphoinositide-dependent protein kinase, putative similar to 3-phosphoinositide-dependent protein kinase-1 [Oryza sativa] gi|5001830|gb|AAD37166
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g04510.2 Score 75 E Value 2e-14 Identity 23.50% Align. Length 131bp (22.78%) Frame 3
68418.m00450 3-phosphoinositide-dependent protein kinase, putative similar to 3-phosphoinositide-dependent protein kinase-1 [Oryza sativa] gi|5001830|gb|AAD37166
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW38936.1| Score 97 E Value 1e-40 Identity 79.60% Align. Length 397bp (69.04%) Frame 1
3-phosphoinositide-dependent protein kinase-1 [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_187665.2| Score 77 E Value 1e-24 Identity 53.70% Align. Length 397bp (69.04%) Frame 1
3-phosphoinositide-dependent protein kinase, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0037O17
Clone
Clone name
hba-37o17
LE_HBa0037O17
C03HBa0037O17
P037O17
Clone type
BAC
Contamination
none
Estimated length
152,569
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found