Clone Read LE_HBa0052A09_SP6_81040

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052A09_SP6_81040
Primer
SP6
ID from Seq. Facility
LE_HBa_052_A09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1126 raw
Sequence
>LE_HBa0052A09_SP6_81040 (raw untrimmed)
ATTCACTCTATATCAAGGGTATGAGGAAATATGTGTCACGGAGACCTCAATGAAGTTTTGGATCGCACCGAATGTGTGTGGACTTTGTCTGTGGGTAAGC
CCCTCTTTTTATCTGAGTGTGCTATAGCAGTGGAGTGTGTAACATGCGATAGTGAGAAGGTCTTATTATTGAGAGATGCATTCATGTAGAAAGACTATAT
ACGGTCTTAATATGTGCGGAGCGCCAACACACCCGCCCTCCACTGCAACAAATGCGACCGCTCTATCTGTGCGAGGGAGTCTTGCTCGCGC
CGCGAGTGC
GTTGACAGCACATCTAAAGAACAGGAGCGACCGGAGAACTACAAAGCAAGCGTACGAACTGACACTCGCAGTGAGGCTTGAAAGCGTGCGTGGCTGAGAC
TCCGTGCGTTTCGCACGTGTGAAGCTTACTGACGGAGTTAGACGAGGTATGATGACAATGAGTGTAAGGTGGTACTTGTGGAGGGGTGGTGGATCGNGCG
AACACGGTGGAATGTATGCTAACCCACTGCGCCTGCCGTGCTAGAGACAATAGTTGTTAATGCATTATGTTCACGCCTATGGTGGGTGTTAGTGCGGGAG
TACTACCATCACGCTAGTAGTTAAGCAATCTAGGATACACCGTAGAGACAGTGAGGAGCGTGAGAAATGTATGTCTTTTGTTTTTATTTTTGCCCGCCCC
CACCAAGTCGATCGGGAATGCAATACATGAGAGAGCTGTAAAAAAAAGAAAAACGACGATACTTAAGCTAAGATATTCAAAGAGCCCATATACCCCTGTG
GACATGAACCAGAAGCTATAGTCTCCCCGAGTGCGTCCGCATTGTAGTTCGCCTGCCGCAGCGACTCTTGATACGTGTGAGCTATTTGTTGACCAACAGA
TTCAACGTCTGAAACACACATCTGCCCAGAATCGTTATCTAATCTTACGTCATGTACTATATGAGCACCGTAGCTTTCACGCAACAATGACGATTATGCA
GCATCATGGTAAAGACTGACGATTCGGGTTGAAGCTCCTACGACGAATGCCCGTGCGCACGATGCAGGGCCGTGCGCGTAAGCTACACGACTCACGACTC
ATCGTGACACCGAAATAACAAGCCCA
>LE_HBa0052A09_SP6_81040 (trimmed for quality and cloning vector)
CG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.0903
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052A09
Clone
Clone name
hba-52a9
LE_HBa0052A09
P052A09
Clone type
BAC
Contamination
none
Estimated length
116,718
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found