Notice: the solgenomics has been unstable, we apologize for the inconvenience.

Clone Read LE_HBa0052K20_SP6_81542

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052K20_SP6_81542
Primer
SP6
ID from Seq. Facility
LE_HBa_052_K20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
620 trimmed for vector and quality, 799 raw
Sequence
>LE_HBa0052K20_SP6_81542 (raw untrimmed)
GGGTATTGATCGATTACTAANNNNNNNNNGNNNNNNNNGNNNNNNNNNNNNNNNTNNNNNNNNANNNNANGGNTCCCCTTAAAGACAAGGAGCNCAAGGA
AGAAGGAANAAACACAGAGCCTTAGAAGATTGTCTTGAGGAACTCTTATTCTCTTTGTGAAGAAAATGGTAAAATGGACATTTGTATTGATTATTTCCTG
AAAAATAAGGTGACATTTCTAGGAATGATGATCTATTTTACCATCTTCAGGGTGCTGTAATATTTTTAAGATTGATCTGAGGTTCGTTACCACTAGTTGA
GGAGTAGAAAAATGGATATCCCTAAAAAACATATATTACTCGATATGGCCATTAGAGTTCGTAGTGATGTCTTTTCGGGTAACTAATGCCTATTTATACT
TCATGGACTTGACAATGCAAATTTTTCGGTAGTATCTTGATTTGTTTATCTTTGTCTTTATTGGGGGTTCTCTAGTATTTTTTTTTACCCCCGGTGATCG
TGAGCAGCATCGGAGGATTATGATGCAGTCACAGAGAGATGAACAATTTTATACCAAGTTATCAGTGTGGGATCTAGATTATGTCTAAAGCATTATCGCG
GCACGTTGTTTACAAGGATGGCATCATTACAAATCCGATGAAGATTGATGCTATTCGTGATTGGGATAGGCCTACTTTGGCTACTAAGGTTTTGAGATTT
TTCATATTATTAGGCTACTACAGGATTTTTTTTTGTATGGTTTCTCTATTATTGAAGCACCTCGTACTCCATTGATTCACCTTGATGTTTCTTTTGATT
>LE_HBa0052K20_SP6_81542 (trimmed for quality and cloning vector)
TTGTCTTGAGGAACTCTTATTCTCTTTGTGAAGAAAATGGTAAAATGGACATTTGTATTGATTATTTCCTGAAAAATAAGGTGACATTTCTAGGAATGAT
GATCTATTTTACCATCTTCAGGGTGCTGTAATATTTTTAAGATTGATCTGAGGTTCGTTACCACTAGTTGAGGAGTAGAAAAATGGATATCCCTAAAAAA
CATATATTACTCGATATGGCCATTAGAGTTCGTAGTGATGTCTTTTCGGGTAACTAATGCCTATTTATACTTCATGGACTTGACAATGCAAATTTTTCGG
TAGTATCTTGATTTGTTTATCTTTGTCTTTATTGGGGGTTCTCTAGTATTTTTTTTTACCCCCGGTGATCGTGAGCAGCATCGGAGGATTATGATGCAGT
CACAGAGAGATGAACAATTTTATACCAAGTTATCAGTGTGGGATCTAGATTATGTCTAAAGCATTATCGCGGCACGTTGTTTACAAGGATGGCATCATTA
CAAATCCGATGAAGATTGATGCTATTCGTGATTGGGATAGGCCTACTTTGGCTACTAAGGTTTTGAGATTTTTCATATTATTAGGCTACTACAGGATTTT
TTTTTGTATGGTTTCTCTAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.951943
Expected error %
1.1721
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO45752.1| Score 68 E Value 5e-21 Identity 43.80% Align. Length 571bp (92.10%) Frame 1
pol protein [Cucumis melo]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 67 E Value 4e-20 Identity 40.20% Align. Length 515bp (83.06%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052K20
Clone
Clone name
hba-52k20
LE_HBa0052K20
C08HBa0052K20
P052K20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found