Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0052O01_SP6_81696

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052O01_SP6_81696
Primer
SP6
ID from Seq. Facility
LE_HBa_052_O01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1310 raw
Sequence
>LE_HBa0052O01_SP6_81696 (raw untrimmed)
TTCTAAGTGTTGTACACACACTAATGCATGGATCTTATAACAGACAGAAGCAATGTTGGGATTAGACTTGTAAGGCAAGATAGTTGAGTACAGAGGTGGA
AGGAGAAGACGGGGAATCGCCACTCCCCCCTTCTCTATTTTGAGGGGGAGAGGAGAAGACACGAAGGATGAGGAGATGGACAGACGAGCGGCTACGAGCT
TTTTTACTAAGGCNTGCCAGCCAACGAGTGAAGAGAGGAGAAAAGACTAACTGAACGATGATATAGACCAACGAGCTGCTCGGGCAGATGAGAGGAGGGG
GCTGCCCTACACTCGATAATCGATCAGAGACAGACAACGCCAAGGACCATCAGAACAACTGCATCGTACGAGTGCTACTGGCCACGCGACGCAATAAAGT
AATATCTGCAACAGATCAATCATTGTGTGCGCTTGCGCAGATAGTGTGACATGTACACACCGCATATCATGCGGCCTTCATACGCGAGACTAACTCATAA
ACAGAAGCAAAGAGGCAACGAGGTGAGACGACAGACGAATGACGATATAGCGCCTGATAGGATACGTTGATACATCCAGATCACCCGACGCCATGACATC
CGCTATGCGACCTAGGAACACCTNGCTAAATGGCGTAGGCCCAANGATGAGCCATACGCAGAGACTACGGACACACACTGCCTGCCCACGGTCGACCACC
GAGGCTTACCACCCATGTCCGAGATGAGTACCGACATACACGAATAACGGACATAAGATGTTACCAGCCAGCAACAGCAGGCAGACTAACACAAATGACT
GCGACAGCCTGAGCTGGCAAAACTTGAAACACTGCACAGTACCGGCCGGGACAAACGGGACCATGGATACGAACAAACTTACTCCACCGCCGACCGGAAA
CGAGCCGCGGACGCTACAGACAGGCGGCGATGACAACGAGCTTCCGTCACACGCTCGAAGACGACATAAACCACCACCCGCGACATGCTAAAAGCTGAAA
CTCCGCAGCCACGAATGATGAACACTAGGGTTGTGGCTGGGGCTAGCGACGTAGCGCTGACGGATACTATGCTGAGACGAATCAAGGTACATCACATCAA
TACGTACATAGAAGCGCTAATATGACAGATCGAGGGAGACCGACCAGCTCACCTACACAAACCCACAACCGCCACACCCGCACGTCACCTCAGCACGCAG
ACCGACACTATATACTAACAAAAGCACAACAAAAACGTAACACCAGATAATGACTTGAGTCACCTTCACTGCAATCAGAGGTAGAGTGGCACAGGAGACG
TCGTGACGCC
>LE_HBa0052O01_SP6_81696 (trimmed for quality and cloning vector)
TC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.47027
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052O01
Clone
Clone name
hba-52o1
LE_HBa0052O01
P052O01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found