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Clone Read LE_HBa0055E18_SP6_82018

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0055E18_SP6_82018
Primer
SP6
ID from Seq. Facility
LE_HBa_055_E18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 2184 raw
Sequence
>LE_HBa0055E18_SP6_82018 (raw untrimmed)
ACTAGCATGATATAGTGACTACTGTCACATATGTGTCTGTGTATNGTCTCATAGCATCAGATCATGCTCTCTATGTGCTAGATATNATCTCATATACTAT
GTGTGTGAGTCTATGTATAATTAGATAGTATAGATTGAGTATACTGACTCTCGTAGAGAGTATTGCACNGAGTCATAGTCGCGGCGAGCGCGCCACACAG
TCTCCACATTTGTAGAGAGAGAGAGNGCGAGATACNCGAGNGCNGNGACGGNGGNAGGGNNCAAATNGNAGGAANCAGANGGATAGAGCGCGGACAGAAG
TGCATANCACGTCTACTTATTTANAGGAGAGTAGAGAGAGAAGANCNAGNNCTNCATATGAAGAGAGAGTAGAGTGAGAATGTATAACGAAANTGCAANT
GTAGNAATAGGGGNAGTNTGTGTAGAACTGCAACAANCAGCGCGTGCNTACTCTNCTAGCTNTNGGNATTGANTNACTGATNTAGATTGTGTATNGATGT
ATATNTGTGCTGCTTTTTTGTATGATCGATGTGACTAACGAGNACTGGTGCAGCGAGTCACAAGACGATAATGAAGTGTGTATCTATTCTTAGGTGTNGN
CTATANTNTATGACAAATGAGGNTAGTGNGACNTGNAGTAGATACTGTGCGTCNATGCGTGCGCATCGACATGAACGTGTGCTNGNNCTACTGTGTCGTA
TGCTACATGTGAACTAATACACATGATGGTGTATAGAATTGTATGAAGGACTGTNTGTNTNGTNANANCTGTGCTTGCAAGATGCGTAATGGATCGTNGN
ATGTGATACGCTGACGATGNANGNGCGAGTGNACATGTGNAGCAATGAGAGTATGATAGCAGCGCGAAANCGTATGTAAGTGTGANNACGAATAGTAGTC
GTNCGCGNATNCTATGTNATNGAGGGGAACGGGATAGNAGCAGANCGTNCGCNCACNGTNTAATNTGTCGCGGGNTGCTACAATCTCGATCGTCATGGAA
GCGCGCAGGGANAGGTGACAGANACATGTGACAGGNGNTGTGAGGCACGAGGAGGAGANGANGATGGACGANCGATGCTANAANAGTAGACAGCGGTATT
GAATGACGCNACGGGCATAAANAGTGCAAGTGGTGATGATGACTATGATGGANCTAGACGTGTGCAGATGCACTGAGACACGCAGGGANCCGNANATATN
CGCNGACATGTAAGCGCATAGATATNAGCGCTGGNACTGAGAGTGATGTAGGTACTACGGNCGTGCTCTGAGATGCGGAGTTGTATATATATCGAGCGAG
CAGACAAANTAACTATTACGATGACAAGTGACTGACAGCATGCGTAGATTGAGTCAGTGATATTAGATCGTGTGTGANCGANAGCAGTGANNANCAACCA
AGGTANGCACGACACGTAATGTACTAAGTATGACATTCTCGGACACTGAAATGGACAGTGNTNCAGATGCTACTTATGTGCAGTTGATACTATCGCTGCN
CGATGCTACTNCTCTGTGATGACTANTNCGATGGACGATCTATGTGTACACTGACGATNGATGCTGACAACANATAGTGAATACACTAGCGCACTNTATA
CGTGAACATNGACTCGCGTATGTGACTAGTGATTACAAGACAGAACNGAATAGTGACATGGAGCANAGTGAGAATGATAGNAGAGATAGACCAAGATCGC
TGATCAGAAATGTAGAGCGCGCATGGTNGCACAGAGTAGGANCTACATACACTAANAGGAGATGATATATAGAGACGCANGCNTAGATGCACNGTATGCA
ATGTGANTGCGCACTGGNCCATACGTGACGCTGTANGATGGACTACATNAGATCTATNGTGNGTATAAATCCGANGACNGATCACGACAGTACTGCTGTA
CATATAGNGGNGAAGTNTNTGNCGGGACGTNATNCATGTCAATAGATATATTGTCGTNANGTAGNGTANATNGTAAGAGCTANTNATACTATATCGAAAA
TATGGCNTCTNAACGTTGACGCTAAGCGTGCGAGATGNCAGAATAGCTCAGTGNAGAGGCTGTATAGAGACTGCTGAACAGCTAGACTGCAGAGCANTCG
TGCTNANGCGCTGACTGGTACGCAACGCGTGAGTGAAGNGANCNGTGATGAGAGTGGTGACAGTACTAGANCGTGTGTGANATC
>LE_HBa0055E18_SP6_82018 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0055E18
Clone
Clone name
hba-55e18
LE_HBa0055E18
P055E18
Clone type
BAC
Contamination
none
Estimated length
112,057
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found