Clone Read LE_HBa0055I15_SP6_82204

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0055I15_SP6_82204
Primer
SP6
ID from Seq. Facility
LE_HBa_055_I15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
573 trimmed for vector and quality, 836 raw
Sequence
>LE_HBa0055I15_SP6_82204 (raw untrimmed)
CTTTCTAAATACCAAATAATAAACCTCAAACTCCAATGACCTTGTCTTAAGATCGGTGTAGGATTAGATGACTCTGTGCCATTTTAAATCTCTCTTGGAT
GACCTGTCACCTTCTACATGGCTTGGTAAACTAGATCTAGTCCTATCAAACCTTATTCACCAATTTCAAACCGATCAATAGGAAATTAGGATCTTCTCCC
ATAAAGTACTTCATATGGACCTTTGGATGCTTGAATGGTAACTGTTGTGTAGACGATCTTAATGAAAGCTCCTAATCAGCCAAATTTCTTTTGAAATTAA
TCACACAAGATCTCAATATATTTTCTATGGTTTGGATATTACGTTTCGCTTGTCCATCCATCTGAGGATGAAAAGCAGTGCTTAAATTCACCTTTGGACA
AAAATTTTTTTGGAAACACTTCCAAAACTATGCAGTGAATTGTGCACCTCTATCAGAAATGATTAAAACTGGGACTCCATGAAGTCTCACTACCTCCGGA
ATGTAAAACTTTGCATAATCCTCCGTCGATGGAGTGTTTTTCACGCCCAAAAATTGGGTTGATTTTTTCATTCTATCGACAATCACTCAACTTGAATCAT
GTTGTCTGTGAGACTTTTGGTAATTCTGTGATAAAGACCATGGTTAAATCCATCCCCCACTTCCATTCAAGAAAATTCTATTTAGTCACTAAAACCTCCT
GGTCCCCGGTGTTTGTACTTTCATTTACTGTCTAATAAAACTCTTAATTTTCTATTGTTTATTTTTTTGGTATCCGTTTGAAATGGGATTCACTTTACTT
TGATCCTTCTCTTCCTGGATCCAATCTTATCCGTTA
>LE_HBa0055I15_SP6_82204 (trimmed for quality and cloning vector)
AATAATAAACCTCAAACTCCAATGACCTTGTCTTAAGATCGGTGTAGGATTAGATGACTCTGTGCCATTTTAAATCTCTCTTGGATGACCTGTCACCTTC
TACATGGCTTGGTAAACTAGATCTAGTCCTATCAAACCTTATTCACCAATTTCAAACCGATCAATAGGAAATTAGGATCTTCTCCCATAAAGTACTTCAT
ATGGACCTTTGGATGCTTGAATGGTAACTGTTGTGTAGACGATCTTAATGAAAGCTCCTAATCAGCCAAATTTCTTTTGAAATTAATCACACAAGATCTC
AATATATTTTCTATGGTTTGGATATTACGTTTCGCTTGTCCATCCATCTGAGGATGAAAAGCAGTGCTTAAATTCACCTTTGGACAAAAATTTTTTTGGA
AACACTTCCAAAACTATGCAGTGAATTGTGCACCTCTATCAGAAATGATTAAAACTGGGACTCCATGAAGTCTCACTACCTCCGGAATGTAAAACTTTGC
ATAATCCTCCGTCGATGGAGTGTTTTTCACGCCCAAAAATTGGGTTGATTTTTTCATTCTATCGACAATCACT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.950125
Expected error %
0.164018
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 150 E Value 8e-37 Identity 55.20% Align. Length 564bp (98.43%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 149 E Value 2e-36 Identity 54.70% Align. Length 564bp (98.43%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0055I15
Clone
Clone name
hba-55i15
LE_HBa0055I15
C01HBa0055I15
P055I15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found