Notice: the solgenomics has been unstable, we apologize for the inconvenience.

Clone Read LE_HBa0060A01_SP6_82560

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0060A01_SP6_82560
Primer
SP6
ID from Seq. Facility
LE_HBa_060_A01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1964 raw
Sequence
>LE_HBa0060A01_SP6_82560 (raw untrimmed)
CACCCACACTACCACTACTCTAGATCGCACGAGATACGATTCATACGACNCGATCATNTCTGTACTCACTACTTAAAGATGAGCNCACTCGCACTCTAGT
AAGTATCAAGCATCTATCTCAGAGATCGACGNTCGTAGTTAGTGTNGACGCGTATGTGCGGTATNCTGCACTCTCCACTCTCTGTATCTATTATACTGTG
CGTGTAATGTTCGTACTGTNATCACGATCATATCGCATACCCTGTTGGGNCAAGACACGCNGTGAGTCACTGCACACCGAGTAGACACTGCACTNGCCGC
TTGCNCGACGTATACATNTGGAGACANGATCATTATATATGCATAACTATAATTGTGGTNTATGTCTTTNTGACNTATCTGTCGCTGTGCTAAGTGTCTA
GAACGATTGATTGTCTGATNTGACATACTAATATTTTCCTATNCTCTCACGCTTANACACACGAACGCAGCGCTGGTCACGCTTTGCGAACGNTATTACT
TGAACAGACCTCAAGCTTGANTTGACTCTAATNTNCGTGCACACCCGCCCTTATCTTCGACGTCTGATCTCAGTACGCATTGCACAGCTCGACGTTACAA
GCATGTGTTGACCAGAATACAATGACCAGCATTATGATGATCAATNACATTAATCATACACTTGCGAATCTACAACTAGTGATGACGAATATAATGNCGC
TACGTGGATATTACGTATGATCACGCACNTGCATATGTCACATGTGACTACGNATGCGATNANATCAGCGCTCAGTATGGCGATAATAGATCACCTACTT
ACTTAGTGATGATACGCGNGACGTGCGAATGCACGAGCGTTGCATCCTCGCGACTGTGANCTTANCTACNCTATTACTCGCTCACACAGCGATNANTACA
TATCATATGNACNTCTGTGCACTNCGCTGTNGATACATAATGTATTGTCACAAGTGTGACGAGCTGAATATGCTGNCTGNACAATACGTGTNTCGACGAT
ATAGCTGATAGTACGTGNCAGCTCGTACAGTGTANCTACGTCTTANCACTGGCCGAGTAACTGCGACTACAGCATACAACTAATGTACAATTANGCACTA
CTTTAGATCAACTATACTGTTTTTCTGCTCTCTATCTGCGATGTGTGACACATGATAGCACTGTTATGNCGTTATATCTGTCTCTATTTTGGTNATACAT
TTGCACCGCGCGCCGACACACCACGTGCTGGCGACGACGTAGAATGTTACAGCGGGGCGTCNTACATANCATCTAAANTATATGCACTACGATCATGATA
TNTAGATACAACGATCAGAGTGTGGTCTATGATACGCACNGCANTCACGCATATCGATGGTATTGGAGCATACGGATGNTGTGTGAATACAACTACATNC
GCATATGANTACATGCACATNGNACATATCAGATGATACATACGTTATCGAAAATCACACGGATATAAAGGACATAGTGACGCACACTACGCACCGCGCC
CNCCCACCTGGATNGATAGGATGTNGTGTNTAGTGTNATGCATGTAGTGTGATNGATGANNGTGAAGATGTATATNATGGATGAGTNGNGATATAGTGAA
TGTGATAGAGANGNGTNATNANTGCTGATATNTNGTGCGNAGGTAGATGTGTAGTGAGTCCGAGNTATATAATNCTATAGTGGTGAGATAATATNGATGT
GTGTGATGCNGTGAGTNCATAGCACTAGATACGTGATACGCAATACTAGATGTATAGCTGTACTCGACGGATGTAGTTTATCATGAGACCGATGCTGAGC
GTGTGACACTGTNATAGCAATNCACGANACAGGCANTGTNATAGCTCGATGCTNAGGTGCGCTAAAGCTGACTCTACACGCAGATTGNATACTACCTGCA
TGCTACTCATGACATAAGANTCAAGACTAGATTCNCATTCAGNGCAGGCAGATNGACACTATGT
>LE_HBa0060A01_SP6_82560 (trimmed for quality and cloning vector)
AG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.47027
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0060A01
Clone
Clone name
hba-60a1
LE_HBa0060A01
C06HBa0060A01
P060A01
Clone type
BAC
Contamination
none
Estimated length
128,419
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found