Clone Read LE_HBa0060A20_T7_82599

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0060A20_T7_82599
Primer
T7
ID from Seq. Facility
LE_HBa_060_A20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
707 trimmed for vector and quality, 867 raw
Sequence
>LE_HBa0060A20_T7_82599 (raw untrimmed)
CTAAAACTGGTACCGGGGGCATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTCAGCCTCATCAAATTGCATAGCTTGAACATGTGCTTCAGCCACAT
ACCTACAAGTGTGCGCCCAATCTCGTGTCTTTCTCTCCAAGAACTTGCCTTTGGATTTCCAGGCCAGCAGTATAGCAGAGTATCGAATTCTCCAACTGTC
CGAGCATTGCATATGTATCACCTAACTGCATGCACCCTGCAAATTTTGCGAGTGCATGATTTTGTCCCACATCCAAGTCAGGAATTTCAATTGATCGCTC
CAACAGCGGAATTGCCTCGTTGTACTTCCCTAATCGACAATGTAACGCTGCTACAACGTGCAAACACATAACAAACTCTAAACTGCTGTTACCCTTTGAA
GAACTCTCAAACGATTTCATGGCTCGAAGGGCTAGTTCAAGAGCCTTTTGAACATTTTCCCCGGTTGTTCCAAATCATATCCCTGGCTTGTTTAAGTAAA
TAGGGTCCTAAATATCCTGCCTTAGATGAATCCTCATTTGCATTCGGATTCTTCTCATTCTTCATGGACATAGTTGCATTGAGCCCCCTCAAATTCCCAA
ATCTCTTCGGAGAAGGCTTTTCACCCCCACACTTGCTCCTTGATCTTGGTGGCTTGTTAGCTCTTGGAGAATTCCTTCGCGAAGGAGAATATTTCTCTTC
CTTTGCAGACCAAACAGCATTGGGACTTGCTCGGATCTGTTCTAATTTTTCCCAACCTCTCATCATTGTCTACTTAAACTGCTCAGAAAGCCCCTTTTAC
CATCGAATTCACCAAAATCTCCCCCATGCCCCGCACTCGTTTCAACGCAATTCTCGATCCTCCACAA
>LE_HBa0060A20_T7_82599 (trimmed for quality and cloning vector)
AGCTTCTCAGCCTCATCAAATTGCATAGCTTGAACATGTGCTTCAGCCACATACCTACAAGTGTGCGCCCAATCTCGTGTCTTTCTCTCCAAGAACTTGC
CTTTGGATTTCCAGGCCAGCAGTATAGCAGAGTATCGAATTCTCCAACTGTCCGAGCATTGCATATGTATCACCTAACTGCATGCACCCTGCAAATTTTG
CGAGTGCATGATTTTGTCCCACATCCAAGTCAGGAATTTCAATTGATCGCTCCAACAGCGGAATTGCCTCGTTGTACTTCCCTAATCGACAATGTAACGC
TGCTACAACGTGCAAACACATAACAAACTCTAAACTGCTGTTACCCTTTGAAGAACTCTCAAACGATTTCATGGCTCGAAGGGCTAGTTCAAGAGCCTTT
TGAACATTTTCCCCGGTTGTTCCAAATCATATCCCTGGCTTGTTTAAGTAAATAGGGTCCTAAATATCCTGCCTTAGATGAATCCTCATTTGCATTCGGA
TTCTTCTCATTCTTCATGGACATAGTTGCATTGAGCCCCCTCAAATTCCCAAATCTCTTCGGAGAAGGCTTTTCACCCCCACACTTGCTCCTTGATCTTG
GTGGCTTGTTAGCTCTTGGAGAATTCCTTCGCGAAGGAGAATATTTCTCTTCCTTTGCAGACCAAACAGCATTGGGACTTGCTCGGATCTGTTCTAATTT
TTCCCAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974858
Expected error %
1.29192
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g27960.1 Score 146 E Value 1e-41 Identity 61.00% Align. Length 649bp (91.80%) Frame 1
68416.m03489 kinesin light chain-related low similarity to kinesin light chain [Plectonema boryanum] GI:2645229; contains Pfam profile PF00515: TPR Domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g27500.1 Score 144 E Value 6e-40 Identity 60.20% Align. Length 598bp (84.58%) Frame 1
68414.m03352 kinesin light chain-related low similarity to kinesin light chain [Plectonema boryanum] GI:2645229; contains Pfam profile PF00515 TPR Domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS44558.1| Score 146 E Value 5e-40 Identity 61.00% Align. Length 649bp (91.80%) Frame 1
kinesin light chain-like protein [Arabidopsis thaliana] dbj|BAB01483.1| unnamed protein product [Arabidopsis thaliana] ref|NP_189435.1| kinesin light chain-related [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF99740.1| Score 144 E Value 3e-38 Identity 60.20% Align. Length 598bp (84.58%) Frame 1
F17L21.29 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0060A20
Clone
Clone name
hba-60a20
LE_HBa0060A20
C02HBa0060A20
P060A20
Clone type
BAC
Contamination
none
Estimated length
108,051
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found