Clone Read LE_HBa0040F02_T7_8307

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0040F02_T7_8307
Primer
T7
ID from Seq. Facility
LE_HBa_040_F02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
860 trimmed for vector and quality, 913 raw
Genbank Accession
DU027529
Sequence
>LE_HBa0040F02_T7_8307 (raw untrimmed)
CCTGCCTGGGTACCCGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTTTATATGTCTTAGGTTCAATAATTGTAGAATAAGCAGCAAGAGAA
ATTCTATATGAAGGAGACAGTCTAGAATAAGAAACATAGTTGGAAAGTGGATATAAGCATGCATTTTTAGTACTAGGAGTAACATAGTTATCCAACCAAC
TGGGAGGTTTTGAGAGTCTGGTAGATCTTCTTAGAGAAGGTTGATTTTCTGTTAATACACCTATCTCAGAAAGTGAATGAGACTCACCTAAAGATGATGT
AGAGACTGAGGTATCTGAAGTAGTAAAAGACTCAGAAGGACTAGAAGAATCATCAACAAAATGTAGAACAGGAAACAAAGGAGAAGGAGAAGATTGAAGA
TCTTTAAAAGGAAATATACCTTCTTTAAACACTGTGTCTTTGCTAACAAAGAAGGAGTGAGAACTCAGGTCATATAATATATACCCCTTTTTTGATGAAG
AATAGCCTAAGTGTATTGCAGGAATAGCTCTGGGAGAAAACTTATCCAAATGTTTGGGAGTAGTAGCATAGCACAAGGAACCAAAGACTTTCATATGTTG
AAGAGAGGGTATTTTACCAAACAATACTTCAAAAGGAGACTTATTTTGCAGTACTACAGAAGGCAGTCTATTCAGGATATATACTGCTGTGGACACACAA
CAACCCCAGTACTTCAAAGGAATACTTGCTTGAAACCTTAATGCCCTGGCCATATCAAGATTGGACCTATGTTTTCTCTCAACAATTCCATTTTGTTGAG
GAGTATAAACAGAAGAACTCTGATGTATAACTCCACATTTCTTGAACAGACTAGACACTTGGGAGTTAACAACTCAGTTCCATTATCTGTCCTGATACAC
TTAACATTGATTC
>LE_HBa0040F02_T7_8307 (trimmed for quality and cloning vector)
AGCTTCTTTATATGTCTTAGGTTCAATAATTGTAGAATAAGCAGCAAGAGAAATTCTATATGAAGGAGACAGTCTAGAATAAGAAACATAGTTGGAAAGT
GGATATAAGCATGCATTTTTAGTACTAGGAGTAACATAGTTATCCAACCAACTGGGAGGTTTTGAGAGTCTGGTAGATCTTCTTAGAGAAGGTTGATTTT
CTGTTAATACACCTATCTCAGAAAGTGAATGAGACTCACCTAAAGATGATGTAGAGACTGAGGTATCTGAAGTAGTAAAAGACTCAGAAGGACTAGAAGA
ATCATCAACAAAATGTAGAACAGGAAACAAAGGAGAAGGAGAAGATTGAAGATCTTTAAAAGGAAATATACCTTCTTTAAACACTGTGTCTTTGCTAACA
AAGAAGGAGTGAGAACTCAGGTCATATAATATATACCCCTTTTTTGATGAAGAATAGCCTAAGTGTATTGCAGGAATAGCTCTGGGAGAAAACTTATCCA
AATGTTTGGGAGTAGTAGCATAGCACAAGGAACCAAAGACTTTCATATGTTGAAGAGAGGGTATTTTACCAAACAATACTTCAAAAGGAGACTTATTTTG
CAGTACTACAGAAGGCAGTCTATTCAGGATATATACTGCTGTGGACACACAACAACCCCAGTACTTCAAAGGAATACTTGCTTGAAACCTTAATGCCCTG
GCCATATCAAGATTGGACCTATGTTTTCTCTCAACAATTCCATTTTGTTGAGGAGTATAAACAGAAGAACTCTGATGTATAACTCCACATTTCTTGAACA
GACTAGACACTTGGGAGTTAACAACTCAGTTCCATTATCTGTCCTGATACACTTAACATT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.948046
Expected error %
0.477528
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 191 E Value 4e-48 Identity 39.70% Align. Length 856bp (99.53%) Frame 2
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU93584.1| Score 188 E Value 5e-47 Identity 39.30% Align. Length 856bp (99.53%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0040F02
Clone
Clone name
hba-40f2
LE_HBa0040F02
P040F02
Clone type
BAC
Contamination
none
Estimated length
46,985
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found