Clone Read LE_HBa0069E10_SP6_83538

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069E10_SP6_83538
Primer
SP6
ID from Seq. Facility
LE_HBa_069_E10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
704 trimmed for vector and quality, 952 raw
Sequence
>LE_HBa0069E10_SP6_83538 (raw untrimmed)
CAGCAAGAAGTGATCAAGAAGCAGCATTTCCTAGGATTTTCACCCGTTGAATTATTGCCCCTCACATAGTATATCATTATTAAACCGCTAATACTTATCG
ACGTGGGATAAACCGTCCCAAGAGATCTGGTTAACTTACTCATCATATAGAATACACGCCTGATTTCTGACTGCTGAATTATTCACCTGAACAAACTTTC
TCATTGTTTTCTTGCCCCAGCAGTGATGATGAACCGTTGGCCTTCAAGAAAATGCATGAATTTTCCACAGTGGACGGCTTTGTAGAGATAAGTGAATCCT
TGGCGGACATGATAAAGTTCATTGCAAATGAGCCCTCTGTTGGGCTTTTCTATATTCAACAGCATTCCCAGAAAGCAGCCCCCAACCTTGTTAATCTCAA
AAACAGTATCGAAGAAAAATCCCGTGAAGTGGCACTTCACACTGAAGATTCAGATGATTCCATCACCGTGATCAGGTCGATGAAAGAGTGTGGCCTTCCA
ATTGCTAATGGTATGATCAAGGATCTCAGACATACCCTGGCTGTCATTTCAAAGAAACAACCAAAAAAAGGATTGATTAGCGGAACCAGTTCTAGCTTCC
CAGTCGGTATAGCTACCTCTTGGAGTCCTTCCACCTGGGTTCGTAATACTGTTTCAGAAGAGGATGATAACAGGACAGCTGGATATCTCTCGAATGTTTT
TCAGTCTGCAAAACAGAAGGCTAGTAACTTCAAGTGGCCTCAGTTAGAAACCGGAGAATCACTACCCACCAAGATTGAACCATCTTCATCAGACAAGGAT
GACCCATCTGTGACCCCTACTAAAGACCCGCTATTAGCTGCAGATGTGACCTCCTCCTCCTCCCTTGGACGGACTAATAAATGAAAACTTAACATTGTCA
AGTCTAACGGCAATGAACTACAAACAAAAACAGGTAAACAAAGCTTGTCCAA
>LE_HBa0069E10_SP6_83538 (trimmed for quality and cloning vector)
ATTTTCACCCGTTGAATTATTGCCCCTCACATAGTATATCATTATTAAACCGCTAATACTTATCGACGTGGGATAAACCGTCCCAAGAGATCTGGTTAAC
TTACTCATCATATAGAATACACGCCTGATTTCTGACTGCTGAATTATTCACCTGAACAAACTTTCTCATTGTTTTCTTGCCCCAGCAGTGATGATGAACC
GTTGGCCTTCAAGAAAATGCATGAATTTTCCACAGTGGACGGCTTTGTAGAGATAAGTGAATCCTTGGCGGACATGATAAAGTTCATTGCAAATGAGCCC
TCTGTTGGGCTTTTCTATATTCAACAGCATTCCCAGAAAGCAGCCCCCAACCTTGTTAATCTCAAAAACAGTATCGAAGAAAAATCCCGTGAAGTGGCAC
TTCACACTGAAGATTCAGATGATTCCATCACCGTGATCAGGTCGATGAAAGAGTGTGGCCTTCCAATTGCTAATGGTATGATCAAGGATCTCAGACATAC
CCTGGCTGTCATTTCAAAGAAACAACCAAAAAAAGGATTGATTAGCGGAACCAGTTCTAGCTTCCCAGTCGGTATAGCTACCTCTTGGAGTCCTTCCACC
TGGGTTCGTAATACTGTTTCAGAAGAGGATGATAACAGGACAGCTGGATATCTCTCGAATGTTTTTCAGTCTGCAAAACAGAAGGCTAGTAACTTCAAGT
GGCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.979056
Expected error %
0.228912
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g39170.1 Score 187 E Value 4e-48 Identity 18.30% Align. Length 485bp (68.89%) Frame 2
68415.m04811 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO50615.1| Score 187 E Value 2e-46 Identity 18.30% Align. Length 485bp (68.89%) Frame 2
unknown protein [Arabidopsis thaliana] gb|AAO41915.1| unknown protein [Arabidopsis thaliana] gb|AAC28990.1| unknown protein [Arabidopsis thaliana] ref|NP_181450.1| expressed protein [Arabidopsis thaliana] pir||T02585 hypothetical protein At2g39170 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_480134.1| Score 144 E Value 2e-33 Identity 15.20% Align. Length 473bp (67.19%) Frame 2
unknown protein [Oryza sativa (japonica cultivar-group)] ref|XP_507133.1| PREDICTED OJ1349_D05.116 gene product [Oryza sativa (japonica cultivar-group)] dbj|BAC99760.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069E10
Clone
Clone name
hba-69e10
LE_HBa0069E10
P069E10
Clone type
BAC
Contamination
none
Estimated length
91,879
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found