Clone Read LE_HBa0069K12_SP6_83830

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069K12_SP6_83830
Primer
SP6
ID from Seq. Facility
LE_HBa_069_K12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
680 trimmed for vector and quality, 935 raw
Sequence
>LE_HBa0069K12_SP6_83830 (raw untrimmed)
CCTNTTCCGGCTAATAGTAGCCAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTTGTTTCTAAGGATGGAGTGATGGTGG
ATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTACTAATGTGTCAAAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCATCGATTTGT
CAAGGGATTCTCTTCTATTGCTACCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTC
AAGACCTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCGGGTTTGGGTGCAGTGC
TAATGCAAGAGAAGAATGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGTTGCGGTAGTGTT
TGCATTAAAGCAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTACACGGATCATCGTAGCCTTCAGTATGTCTTTACTCAAAAGGATTTGAAC
TTGAGGCAACGGAGATGGATGGAGCTACTAAAGGACTACGATATCACTATCTTGTATCATCCGGGAAAAGCGAATGTTGTAGCGGATGCTTTTAGTAGAA
AGATGGGAAGCATGGGAAGTCTACCTCACTTGCAAGCTTCTAGACGCCCATTTGCTAGAGGAGTTCAGACTCTAGCCTAATGACTTGATGAGATTAGAAG
TAAATGAAAAGGGAGGATTGGTTGGCTTCGGTGGAAGCACAATTTTCTTTTTTTGACAAAAATAAGGGAAGACCTTCTGATGAAGGAAATCCGCCCAAAT
CTCACAAATTGTTTTGCGGGCAAAGCTAAGGACCT
>LE_HBa0069K12_SP6_83830 (trimmed for quality and cloning vector)
TCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTTGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGA
ATTGGGTAAGACCTACTAATGTGTCAAAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCATCGATTTGTCAAGGGATTCTCTTCTATTGCTACCCA
ATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACCTTGTTGACTACCGCACCTATC
CTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCGGGTTTGGGTGCAGTGCTAATGCAAGAGAAGAATGTGATTGCTT
ATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGTTGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTT
ATATGGGGTTAAGTGTGAGGTCTACACGGATCATCGTAGCCTTCAGTATGTCTTTACTCAAAAGGATTTGAACTTGAGGCAACGGAGATGGATGGAGCTA
CTAAAGGACTACGATATCACTATCTTGTATCATCCGGGAAAAGCGAATGTTGTAGCGGATGCTTTTAGTAGAAAGATGGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971612
Expected error %
0.0418641
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 343 E Value 3e-93 Identity 23.60% Align. Length 674bp (99.12%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 340 E Value 2e-92 Identity 23.60% Align. Length 674bp (99.12%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069K12
Clone
Clone name
hba-69k12
LE_HBa0069K12
P069K12
Clone type
BAC
Contamination
none
Estimated length
89,546
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found