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Clone Read LE_HBa0072A04_SP6_84102

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0072A04_SP6_84102
Primer
SP6
ID from Seq. Facility
LE_HBa_072_A04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
14 trimmed for vector and quality, 1822 raw
Sequence
>LE_HBa0072A04_SP6_84102 (raw untrimmed)
CGCGCGCAGACTAATAAGACTTNGTGTACATAGTCGGCTCTAGTCATCAAGTTTCTTGCTACTTGCCTATNGGAAGCNGTTNCCCACCACGTGGGTGTTG
ACNCATGTACGTCCTNCGGAANATGTCACCGACTCTCTTGTTTGTNTCTNTNCNCGTTCGTGTNACTGTGATCTATAGTGTACGAGCCTAGTGCCTNCNG
ATNTGGTTATTTNNTACCATATCTGATGCCGNANTGCACGTACAGGATNAGATNANCGCNCTTNGNANTCAGATATAACCCCCNACAGCTNTNTAGAGTA
CTNGCACGTCTTGTCANAGTCATACATATGCTCACGCTCTTTATTACAANCACGAAGNCTTNGNGNTNTNTTAGATGAGGNTAGNANACGAACGAGACGC
GCCACTATCTCTGTAAATACAGTCACACGTATACGCTCACAGTTAGTTGTGGTCNGNCNACTNCNAATANGATNGNGNGNCNAAANAGTCGCGNTNTNCT
CNGNGNCATAGACCGTGTTAGTGTNTNTNCNTNCNANATTCAACNTNCANTGCTTNAGACGNGCAGAGATTAGGTCTACGACGAGCTCNAGTCATTNGNG
GGTGNTAGTCTNCNTNCNTACAANTATNACNANANTACATAGACTTACGTTGAACTGCCACCGAGCAATAANGTATTAAATGAC
ACATGGCTCGCGCTGC
AACACCTCTCAGACACAACACGACCTCTCAGTCGTTGAACCGACNAGAAATCNANANAACATAGACAGAGCACCGCCCACACACCACACTCATGAANCTT
CTGCAGATCATTATGTTGTGCATTTGACAAATTGACATATATGTTTTANTTCTATAACTTATTGAATGTCTGCAGGCCTGCTCTGTCTTGATCGTAGTTC
TGCTCTTACATCTTTCTTCAGATAATGAATGCTAGATAATAGAGGTACAATCGTAATATTACAAGTACAATATTGCTAGAACACCACGCCTCTGTTATGA
GACATCATCAGTCCACCAATGCGCGTGTCCTCATAATACACGGGCGACCTGGATTCTTGTCAATGGGTGTTATCTACAAATAGATATAANGCATNGCANT
AGATAATGGACACGAGTTTACGCTGTTCATGGAGAGCTCGTGGCGACCTGATAAACTTTGGATGATCTCTTGCATATAAACATACATAGAGGATGTTGTN
GTGTGCGTACGATTGCACTTCCTCATAGACTCTCTCTCTNCTCATCTCGTATCTATTAAGGCCTCACATATCTCGTCCCTGCAACATCGTNGTNACACAG
ACGATTTTATANAGACGNGACACTTGACGACTTAGTAATCTGTATANTGACCATTGTGTTNCTGCTACTAATCACTCTATGTGTATTGTGTATCGTNGTT
CTGCGTCAATCATAGCTCACCATACAGATGAGCAGCANTGCACACTCACTCACCACAGATTCATGACTCTCTCTCGTGCTATTCTCTGCTGTCCCTATCT
CTCTCCTCTTNCTCCGCTATACTTAGATAATATCGCTCATTCAAAGTGACCTCTGTGCCTATACATATCTCTACATATANCTATACCGCTGCTTGTCGCT
GTCATCTATATACTATATATATATACGATTATCTTTGATGACACCTGTTGATATCTTNTGCTCATCCCTTTCCTCTTCTTTNCTGATCATCTATATTCTG
TCTGTATTTCTATATTANCATAACATTACTTCACTATCTACTATCGTTCTTCACGACACATATATATACTTTTACTTCAAGTGATTTNACACACCATTAT
CTTCGACAATTGGAGGGCATAT
>LE_HBa0072A04_SP6_84102 (trimmed for quality and cloning vector)
ACATGGCTCGCGCT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.236449
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0072A04
Clone
Clone name
hba-72a4
LE_HBa0072A04
C02HBa0072A04
P072A04
Clone type
BAC
Contamination
none
Estimated length
105,456
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found