Clone Read LE_HBa0040J09_SP6_8512

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0040J09_SP6_8512
Primer
SP6
ID from Seq. Facility
LE_HBa_040_J09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
635 trimmed for vector and quality, 838 raw
Genbank Accession
DU027714
Sequence
>LE_HBa0040J09_SP6_8512 (raw untrimmed)
GCCCCCTAACCTTGGAAATTNGANGAAGTTANGTAATCCAGGGTCTGACATTGTGATAGATTTATCTGAAGAAGACACTATCTAATGGTAAGAGAAAATT
TCTTAGGATGTATATCTGTTTCAAGGCAATTAAGCTGGGTTTTAAGTCTGGATTAAGACCACTGATTGGGTTAGATGGTAAATTCCTTAAAGGAAAGGTT
AAGGAACAAGTATTGTGTGCTGTTGGTCAAGACAGTAATAAATCTTTCTACCCTCTAGCTTGGGTTGTGGTAGATAAAGAGACTAAGAGGACTTCGACAT
GGTTTATGCCACATTTGCAACATTTCCTTGTGCTTCAAAATGGTGAAGCACTGACATTCATATCAGATATGTAGAATTTAATAATATACTACTAATTTGC
AATTTAATTACCTTTTCTTGATACTATTTTCTTTATTAATTTTAGTTGTTTTATTTGATACTTACGGGCTTCTTGAAGCAGTAAGGACAGTCTTACCTGA
AGTAAATTAGAGATATTGTGCAAGGCATATTAAGGCAAATTGGTACAGCAGATGGGGCAAAAGTGAGCTGAAAAAGTTGCTATGGTAGGTTGCATGGTCA
TCATTTACAGAGGAGTTAGAGGACCAACTTTAAGAGATCAAGAAAGTTGATGGAGAGGTTGGACATGATTTAATAAAAGAATATCCTCCAAGAGCATGGT
GCAGAGCCTATTTAGATATAGTGTGCATAAATTCAGGTGGGGGGAATAACTTTTACTGAATCTTTCAATGGCTTGGGATACTTTAAGCCAAGGGACAAGC
CTAATTTTTTGAAAATATGAAAATACTTTTAGGGCCAA
>LE_HBa0040J09_SP6_8512 (trimmed for quality and cloning vector)
AATCCAGGGTCTGACATTGTGATAGATTTATCTGAAGAAGACACTATCTAATGGTAAGAGAAAATTTCTTAGGATGTATATCTGTTTCAAGGCAATTAAG
CTGGGTTTTAAGTCTGGATTAAGACCACTGATTGGGTTAGATGGTAAATTCCTTAAAGGAAAGGTTAAGGAACAAGTATTGTGTGCTGTTGGTCAAGACA
GTAATAAATCTTTCTACCCTCTAGCTTGGGTTGTGGTAGATAAAGAGACTAAGAGGACTTCGACATGGTTTATGCCACATTTGCAACATTTCCTTGTGCT
TCAAAATGGTGAAGCACTGACATTCATATCAGATATGTAGAATTTAATAATATACTACTAATTTGCAATTTAATTACCTTTTCTTGATACTATTTTCTTT
ATTAATTTTAGTTGTTTTATTTGATACTTACGGGCTTCTTGAAGCAGTAAGGACAGTCTTACCTGAAGTAAATTAGAGATATTGTGCAAGGCATATTAAG
GCAAATTGGTACAGCAGATGGGGCAAAAGTGAGCTGAAAAAGTTGCTATGGTAGGTTGCATGGTCATCATTTACAGAGGAGTTAGAGGACCAACTTTAAG
AGATCAAGAAAGTTGATGGAGAGGTTGGACATGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948741
Expected error %
0.155221
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g14570.1 Score 67 E Value 5e-15 Identity 41.60% Align. Length 441bp (69.45%) Frame 3
68415.m01632 SWIM zinc finger family protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE05840.2| Score 93 E Value 1e-23 Identity 51.10% Align. Length 504bp (79.37%) Frame 3
OSJNBa0091C07.2 [Oryza sativa (japonica cultivar-group)] ref|XP_472021.1| OSJNBa0091C07.2 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU43947.1| Score 93 E Value 1e-23 Identity 51.10% Align. Length 504bp (79.37%) Frame 3
hypothetical protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0040J09
Clone
Clone name
hba-40j9
LE_HBa0040J09
C08HBa0040J09
P040J09
Clone type
BAC
Contamination
none
Estimated length
82,363
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found