Clone Read LE_HBa0075F12_SP6_85126

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0075F12_SP6_85126
Primer
SP6
ID from Seq. Facility
LE_HBa_075_F12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
763 trimmed for vector and quality, 897 raw
Sequence
>LE_HBa0075F12_SP6_85126 (raw untrimmed)
CCGGAGATTTTTAATTTGATATTTAGCTCAGTTGCTTTTTAAACTGTTTGTCTTTTTTATTTTAATTTGCAGAACAGAAGAAACAGAAACTGTCTGAAAT
AAAAGCTGGCCTAGATGATGCTGAAGCATTGGTAATTTGTAAGCTTTGGCTGCAACCTGTTTTTGCTTGTTTCTGAAATATTTTTGTTTATAATGCTCTT
TTGTCCTTATTCCAGATTCGCAAAATGGACCTTGAAGCTCGGAGTTTACCTCCAAATGTTAAAGCCACACTTCTTGCCAAGTTGAGAGAATATAAGAGTG
ATCTGAACAACTTAAAAACTGAAGTGAAAAGAATCACATCAGGAAATGTAAACCAAGCTGCAAGGGATGAATTGTTGGAATCGGGAATGGCAGATGCTAA
CATGGTAATCCCCTTTCCCTATCGTGTTTTCAAGAGTCAAGCTAGTCCGTTAACGAAAGAACTATAAGCTAATCTTTATCCTTTATAGCTTACATAAGTA
GATTCACATTCCCTTCCTGTTGAGTGTAGGCTGCTAGTTTTCAATTGCTACTTCAATCGTAATGGCATGCAGATAATTGTACTGTGCAGACTGACTATCA
TAGTTTTCCAGACATCTGAACCAATAGTGCTTCTCTCACATTGTATTACTTTATTGGTTTACATTTCCAACTTTATCTTTGTGGTCTATCAACTTTAGGT
TCTATTTTGCCCCCTCTTTTGTGTTGTTTGAATGATTTTTCTTTACAAGGGAAGTTTAACCAGTGTGGTGTCGTTTATGTCAAGAGCGAGAATAGCAAGT
AGTGTAAGCTCCTAAACATTACCCCGTCCATTCCATTTTATGATAGAGGTATTCGGTAGGGCACAAGGAAAAAATGTTTAATTTAATTTTTACTAGG
>LE_HBa0075F12_SP6_85126 (trimmed for quality and cloning vector)
TTGCTTTTTAAACTGTTTGTCTTTTTTATTTTAATTTGCAGAACAGAAGAAACAGAAACTGTCTGAAATAAAAGCTGGCCTAGATGATGCTGAAGCATTG
GTAATTTGTAAGCTTTGGCTGCAACCTGTTTTTGCTTGTTTCTGAAATATTTTTGTTTATAATGCTCTTTTGTCCTTATTCCAGATTCGCAAAATGGACC
TTGAAGCTCGGAGTTTACCTCCAAATGTTAAAGCCACACTTCTTGCCAAGTTGAGAGAATATAAGAGTGATCTGAACAACTTAAAAACTGAAGTGAAAAG
AATCACATCAGGAAATGTAAACCAAGCTGCAAGGGATGAATTGTTGGAATCGGGAATGGCAGATGCTAACATGGTAATCCCCTTTCCCTATCGTGTTTTC
AAGAGTCAAGCTAGTCCGTTAACGAAAGAACTATAAGCTAATCTTTATCCTTTATAGCTTACATAAGTAGATTCACATTCCCTTCCTGTTGAGTGTAGGC
TGCTAGTTTTCAATTGCTACTTCAATCGTAATGGCATGCAGATAATTGTACTGTGCAGACTGACTATCATAGTTTTCCAGACATCTGAACCAATAGTGCT
TCTCTCACATTGTATTACTTTATTGGTTTACATTTCCAACTTTATCTTTGTGGTCTATCAACTTTAGGTTCTATTTTGCCCCCTCTTTTGTGTTGTTTGA
ATGATTTTTCTTTACAAGGGAAGTTTAACCAGTGTGGTGTCGTTTATGTCAAGAGCGAGAATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959566
Expected error %
0.0727652
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g39510.1 Score 116 E Value 2e-26 Identity 20.10% Align. Length 323bp (42.33%) Frame 3
68418.m04784 vesicle transport v-SNARE 11 (VTI11) / vesicle soluble NSF attachment protein receptor VTI1a (VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVTI1a) {Arabidopsis thaliana}
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g29100.1 Score 107 E Value 9e-24 Identity 27.40% Align. Length 185bp (24.25%) Frame 3
68416.m03643 vesicle transport v-SNARE 13 (VTI13) / vesicle soluble NSF attachment protein receptor 13 identical to identical to Vesicle transport v-SNARE 13 (SP:Q9LVP9) {Arabidopsis thaliana}; similar to v-snare AtVTI1a (GI:6690274) (GB:AAF24061) [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB01986.1| Score 117 E Value 3e-25 Identity 20.10% Align. Length 323bp (42.33%) Frame 3
vesicle transport v-SNARE (vesicle soluble NSF attachment protein receptor) protein [Arabidopsis thaliana] sp|Q9LVP9|VT13_ARATH Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB11026.1| Score 116 E Value 7e-25 Identity 20.10% Align. Length 323bp (42.33%) Frame 3
v-SNARE AtVTI1a [Arabidopsis thaliana] gb|AAM10306.1| AT5g39510/MUL8_190 [Arabidopsis thaliana] gb|AAL49951.1| AT5g39510/MUL8_190 [Arabidopsis thaliana] ref|NP_198767.1| vesicle transport v-SNARE 11 (VTI11) / vesicle soluble NSF attachment protein receptor VTI1a (VTI1A) [Arabidopsis thaliana] sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVTI1a)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0075F12
Clone
Clone name
hba-75f12
LE_HBa0075F12
P075F12
Clone type
BAC
Contamination
none
Estimated length
49,717
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found