Clone Read LE_HBa0075H11_SP6_85220

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0075H11_SP6_85220
Primer
SP6
ID from Seq. Facility
LE_HBa_075_H11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
576 trimmed for vector and quality, 958 raw
Sequence
>LE_HBa0075H11_SP6_85220 (raw untrimmed)
ACCCGGGTAATTGAGTTTTTACTCTCATGAGAATTATTTTTGGGGTCGAGTGAGGCCCTAGTGCTATATCTTTACCCCCAAGTAGGCAGATAATGGAAGT
TCACTGTACTAACCAATCCTTGTTTAGAATCACTGTATTATGAATGACATTTGTATCTTAATCTCTGAAATCCAGGACTCTCTCAGATTATCTTGGGCAA
GGAACCATGTTAGCAATTGTTTGCAAGACGCTTGATGGACTTAAAGCACTGGAAACATATGATAAGGAAGGTCTTATAATTAAAAGTTCTGGTCTTCATG
GAGTTGGAGCTTCAATTGGAAGACCTTTGGATGACCGATATCTTGTAATTTGTCTTGAGAACTTAAGGTTTGTGGTTATGATGATCTCTTCTTGCAAATA
CATCTCATATTGTTTAACACTTCTTTACTCTCTTATTTTTTCATTTTTGGGTTTATCATTTTAGACCATACACCAGTGAATTTATTGCTGATGACCCTCA
GAGAAGGCTGTCCATAAAGAAGCCAAGATACGTCAACGGGAAAACTCTTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATTGACACTGATAAC
TTATATTGTGTTACAAGCAATGGTCATGGACTGAGAGAGACCCTCTTCTATGGACTCTTCTCACATTTGCAAGTATACAAAACAAGGGCAGACATGATGC
AGGCACTACCCTCTATAGCTGGTGGATCCATATCATTTGGATGGTGGGATCATAATAAGTGTTGGGTTATTTTCCTCACGCAAAACGTAAACAATTTTTC
ATTATTTATTGCGTTATAATTTATATTTTTTTCCTCATCATACACCACCTTTTTGTAAAGAACTTTAAAGAATTGTTGCCCTTTAACTGTTAATCTTTGT
GTCACGTTATTATTTTTTCCCCTTTGAGACATACTCCGGCGCAATTTACGTTATACCC
>LE_HBa0075H11_SP6_85220 (trimmed for quality and cloning vector)
GGGGTCGAGTGAGGCCCTAGTGCTATATCTTTACCCCCAAGTAGGCAGATAATGGAAGTTCACTGTACTAACCAATCCTTGTTTAGAATCACTGTATTAT
GAATGACATTTGTATCTTAATCTCTGAAATCCAGGACTCTCTCAGATTATCTTGGGCAAGGAACCATGTTAGCAATTGTTTGCAAGACGCTTGATGGACT
TAAAGCACTGGAAACATATGATAAGGAAGGTCTTATAATTAAAAGTTCTGGTCTTCATGGAGTTGGAGCTTCAATTGGAAGACCTTTGGATGACCGATAT
CTTGTAATTTGTCTTGAGAACTTAAGGTTTGTGGTTATGATGATCTCTTCTTGCAAATACATCTCATATTGTTTAACACTTCTTTACTCTCTTATTTTTT
CATTTTTGGGTTTATCATTTTAGACCATACACCAGTGAATTTATTGCTGATGACCCTCAGAGAAGGCTGTCCATAAAGAAGCCAAGATACGTCAACGGGA
AAACTCTTCCTGGTTTTCTTGGTTTTGCTGTCAATATGATCAATATTGACACTGATAACTTATATTGTGTTACAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954767
Expected error %
0.268359
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g49250.1 Score 71 E Value 8e-27 Identity 51.50% Align. Length 444bp (77.08%) Frame 2
68416.m05382 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g24280.1 Score 49 E Value 3e-15 Identity 34.70% Align. Length 528bp (91.67%) Frame 2
68418.m02856 expressed protein ; expression supported by MPSS
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD81389.1| Score 91 E Value 2e-31 Identity 60.60% Align. Length 444bp (77.08%) Frame 2
unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAD81261.1| unknown protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_913545.1| Score 91 E Value 2e-17 Identity 20.20% Align. Length 197bp (34.20%) Frame 2
unnamed protein product [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0075H11
Clone
Clone name
hba-75h11
LE_HBa0075H11
P075H11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found