Clone Read LE_HBa0093E07_SP6_85836

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0093E07_SP6_85836
Primer
SP6
ID from Seq. Facility
LE_HBa_093_E07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
676 trimmed for vector and quality, 957 raw
Sequence
>LE_HBa0093E07_SP6_85836 (raw untrimmed)
CCCGGCTTTTTAAATGATTTTTGGAGTGGCTTCTGCATAGGATAATGTTTATCTTCGTGAAAAAACATCATCTCCTTATTGCTTATTCAAAATTGATGTA
TTTGTGTGCACTTACTGTCTGCTCCACCAAGTTGATTAACTGCTTCTATAAACCTCTCATGGAGGTCCGGGGTCCATTTCAATCTTGGCTTAGCATCAGT
TGATAGGACAAGCCCTGAATCTCCGTTGCCATTTCCACCTTGCAGGAACAGATGTCGTTCAGGAACAGACATTCTTGTTGAAGGGTGCATGCTCTTATCC
TGGTGGTGATGATGGTACATCTTTCTAGCCTTCTGTTTGATGATTAGCAGATAAGTCTCGTGATGTGCTTTAATAGGAAACGAATCATGATAGGTAGTTT
AGCTAATCATAACGCACCTGAAAGTGATCTGCTGTACTTGATTTCAGTCTAGTCTTGCCCTTCAAATGCGAATCACGATTCTTCTGTATTCTCCAGACTA
TGATGTTGTTGCTCCTGATACTTGGTTCAAAGAGAACTGTGTTCTACTGCTTTTATGTATGTCCTTAGTTATACAACTTCACAGATCAAAGATGTTGCCA
AAGAGCTCTTATAAGCGAATGGGAAGAGAAAGAGGGACGGGTCCAGGTGAAGCACAGAATCTTGGATAGGCCCAGTTGAACGCTAGAACCAATCGAATCT
TCACAGCCGGCTCAAAAAGAGATCTCATCCTTCCAGTTTTACATATTGGTGGGTCCTAGCATGATATTCCTCTGCACTATTAAGTTATTGAAACACTTAA
ACACCTTACAATAGGTACAAAGAATTGATCCTCCCCCGACTTTTGTGTTCTCATATTCTTCATCTACCAAGTTTGGGAACCATATCCCCGAATCATAATG
GAAATTTTTCTGATGCTGGCTGAAAGAACCCCCATCCTAAGGAGTATAATTCCCTAA
>LE_HBa0093E07_SP6_85836 (trimmed for quality and cloning vector)
GTGGCTTCTGCATAGGATAATGTTTATCTTCGTGAAAAAACATCATCTCCTTATTGCTTATTCAAAATTGATGTATTTGTGTGCACTTACTGTCTGCTCC
ACCAAGTTGATTAACTGCTTCTATAAACCTCTCATGGAGGTCCGGGGTCCATTTCAATCTTGGCTTAGCATCAGTTGATAGGACAAGCCCTGAATCTCCG
TTGCCATTTCCACCTTGCAGGAACAGATGTCGTTCAGGAACAGACATTCTTGTTGAAGGGTGCATGCTCTTATCCTGGTGGTGATGATGGTACATCTTTC
TAGCCTTCTGTTTGATGATTAGCAGATAAGTCTCGTGATGTGCTTTAATAGGAAACGAATCATGATAGGTAGTTTAGCTAATCATAACGCACCTGAAAGT
GATCTGCTGTACTTGATTTCAGTCTAGTCTTGCCCTTCAAATGCGAATCACGATTCTTCTGTATTCTCCAGACTATGATGTTGTTGCTCCTGATACTTGG
TTCAAAGAGAACTGTGTTCTACTGCTTTTATGTATGTCCTTAGTTATACAACTTCACAGATCAAAGATGTTGCCAAAGAGCTCTTATAAGCGAATGGGAA
GAGAAAGAGGGACGGGTCCAGGTGAAGCACAGAATCTTGGATAGGCCCAGTTGAACGCTAGAACCAATCGAATCTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.975544
Expected error %
0.183312
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g18240.5 Score 102 E Value 2e-22 Identity 24.90% Align. Length 200bp (29.59%) Frame 3
68418.m02144 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g18240.4 Score 102 E Value 2e-22 Identity 24.90% Align. Length 200bp (29.59%) Frame 3
68418.m02143 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_974799.1| Score 102 E Value 9e-21 Identity 24.90% Align. Length 200bp (29.59%) Frame 3
myb family transcription factor [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_974797.1| Score 102 E Value 9e-21 Identity 24.90% Align. Length 200bp (29.59%) Frame 3
myb family transcription factor [Arabidopsis thaliana] ref|NP_850842.1| myb family transcription factor [Arabidopsis thaliana] gb|AAK01148.1| MYR1 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0093E07
Clone
Clone name
hba-93e7
LE_HBa0093E07
P093E07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found