Clone Read LE_HBa0102E15_T7_86621

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0102E15_T7_86621
Primer
T7
ID from Seq. Facility
LE_HBa_102_E15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
600 trimmed for vector and quality, 871 raw
Genbank Accession
DU077159
Sequence
>LE_HBa0102E15_T7_86621 (raw untrimmed)
CCTGGGTCCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCTTCGACTACCACTTTTATCCTTCTTAGCCATAAAAACAATAGTTGAATTT
TCACAATATAACCTTAATGTCTTAGATATAGAGTCGACAATTCTAAGTTCAGAAATAAAATTCGTTAACCATACACCACGTGAGGTAGCCTCAAAACAAG
AAATGAATTTAGCCTCCATAGTGAAAGTAGCAACTAGAGTCTGTATGGCACTTCTCCTAGATATAGCTCCGCCGGCTAACATAAATATGTAACCTGAAGT
TTATTTCCATGAATCAACACAGCCAGCAAAGTCTGAATCAGAGTAGCCAATGACTTCTAAGTAATCTGATCATTTATACATAAGCATGTAGTCTTTTGTT
CCTTGAAGATATCTTAAGACTTTCTTTGCGCTCTCCAGTGGTCAAGACCTAGATTACTCTGATATCTTCCTAAAATTCCAACAACAAATGGTATGTCAGG
TCTTGTACAAACTTGAGCAAACATCAAGCTTCCGACAACAGAAGCGTAAGGAATGTTCTTCATTTGTTCCCTCCTCAGATTATTCTTCGAGCAATGATTC
TAGTTGAACTTTTCACCCTTTACTATAGGATCTACTCTTGTGTGGAACAATCTTTTCATTCATAATTTCTTTAGATTTTATTGATGTTTGTATCTTTCTA
TATATCTTATGGTTTTTTTTTGTTTTTTTTGATTATCCCTTATTCCCTTATCTTTTAACAACTAACCTCCCTTTGTGTTTATACTCAATATTTCTAAAGA
TTAAAGTTGAGTTTCCTTTTTGTGTTCTTTAGCCCTTTTCTTCTCTCCGGTTTTATCTTTGTATCTTTTAT
>LE_HBa0102E15_T7_86621 (trimmed for quality and cloning vector)
AGCTTGCTTCGACTACCACTTTTATCCTTCTTAGCCATAAAAACAATAGTTGAATTTTCACAATATAACCTTAATGTCTTAGATATAGAGTCGACAATTC
TAAGTTCAGAAATAAAATTCGTTAACCATACACCACGTGAGGTAGCCTCAAAACAAGAAATGAATTTAGCCTCCATAGTGAAAGTAGCAACTAGAGTCTG
TATGGCACTTCTCCTAGATATAGCTCCGCCGGCTAACATAAATATGTAACCTGAAGTTTATTTCCATGAATCAACACAGCCAGCAAAGTCTGAATCAGAG
TAGCCAATGACTTCTAAGTAATCTGATCATTTATACATAAGCATGTAGTCTTTTGTTCCTTGAAGATATCTTAAGACTTTCTTTGCGCTCTCCAGTGGTC
AAGACCTAGATTACTCTGATATCTTCCTAAAATTCCAACAACAAATGGTATGTCAGGTCTTGTACAAACTTGAGCAAACATCAAGCTTCCGACAACAGAA
GCGTAAGGAATGTTCTTCATTTGTTCCCTCCTCAGATTATTCTTCGAGCAATGATTCTAGTTGAACTTTTCACCCTTTACTATAGGATCTACTCTTGTGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.954932
Expected error %
1.28738
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 67 E Value 9e-12 Identity 9.70% Align. Length 389bp (64.83%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP46197.1| Score 155 E Value 1e-59 Identity 58.50% Align. Length 583bp (97.17%) Frame 1
putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] ref|XP_470707.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP52462.1| Score 154 E Value 1e-58 Identity 57.80% Align. Length 583bp (97.17%) Frame 1
putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] ref|NP_920175.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAM47288.1| Putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAK70633.1| Putative gag-pol polyprotein [Oryza sativa]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0102E15
Clone
Clone name
hba-102e15
LE_HBa0102E15
P102E15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found