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Clone Read LE_HBa0102J24_SP6_86878

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0102J24_SP6_86878
Primer
SP6
ID from Seq. Facility
LE_HBa_102_J24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
599 trimmed for vector and quality, 711 raw
Genbank Accession
DU077369
Sequence
>LE_HBa0102J24_SP6_86878 (raw untrimmed)
ATTTAAATGGGAGAGGGAATTCGAAGGAGAATCTGCTTATCGTCCACAGATTTCCAACTCAACATTCTTCACCCTTTTTGATGCTGCAAAACATGCAAAA
GATCCATCGGAAACCCCTTATTGCAAACCAGGGTCACTCAAGGGCCCTGTTATAAGAGGAAAGATAGTATTATGTCTAGCAGGCGGTGGCGTCTCCAGTG
TTGCTAAAGGAAAAGTTGTGAAGGATGCTGGAGGTGTTGGCATGATTGTCATCAAAACATCACAATATGGTGTCACTAAAACAGCTGATGCTCATGTTCT
TCCAGCATTGGATATTTCAGATGCAGATGGATTAAGAATTCGTGCCTATACAAACTCAATATTAAACCCTGTTGCTACAATCACATTCCAAGGAACAACA
ATTGGAGATGAAAATGCTCCAATAGTTGCTGCATTTTCTTCTCGGGGACCAAGTAGAGCTAGTCCTGGAATCTTTTTTTCTGACATACTCGGTCCTGGTG
TTAACATCCTTGCTGCTTGGCCTACACCCGTGGATGACGACAAAAACACCAAATCCACATTCAATATTATATCAGGCACCTCAATGTCTTGCCCTCACCT
TAGTGGTGTAGCAGCTCTGCTGAAGAGCGCACATCCTGATTGGTCTCCTGCTGTTATTAAGTCTGCAATCCATGACAACCGCTGACACTTTAAACCTTTG
CCAATAATTCA
>LE_HBa0102J24_SP6_86878 (trimmed for quality and cloning vector)
AGGAGAATCTGCTTATCGTCCACAGATTTCCAACTCAACATTCTTCACCCTTTTTGATGCTGCAAAACATGCAAAAGATCCATCGGAAACCCCTTATTGC
AAACCAGGGTCACTCAAGGGCCCTGTTATAAGAGGAAAGATAGTATTATGTCTAGCAGGCGGTGGCGTCTCCAGTGTTGCTAAAGGAAAAGTTGTGAAGG
ATGCTGGAGGTGTTGGCATGATTGTCATCAAAACATCACAATATGGTGTCACTAAAACAGCTGATGCTCATGTTCTTCCAGCATTGGATATTTCAGATGC
AGATGGATTAAGAATTCGTGCCTATACAAACTCAATATTAAACCCTGTTGCTACAATCACATTCCAAGGAACAACAATTGGAGATGAAAATGCTCCAATA
GTTGCTGCATTTTCTTCTCGGGGACCAAGTAGAGCTAGTCCTGGAATCTTTTTTTCTGACATACTCGGTCCTGGTGTTAACATCCTTGCTGCTTGGCCTA
CACCCGTGGATGACGACAAAAACACCAAATCCACATTCAATATTATATCAGGCACCTCAATGTCTTGCCCTCACCTTAGTGGTGTAGCAGCTCTGCTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974011
Expected error %
0.616988
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g05920.1 Score 135 E Value 2e-32 Identity 14.30% Align. Length 515bp (85.98%) Frame 3
68415.m00642 subtilase family protein contains similarity to cucumisin-like serine protease GI:3176874 from [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g34980.1 Score 130 E Value 7e-31 Identity 14.10% Align. Length 515bp (85.98%) Frame 3
68417.m04959 subtilase family protein similar to SBT1, a subtilase from tomato plants GI:1771160 from [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA06413.1| Score 313 E Value 2e-84 Identity 26.60% Align. Length 596bp (99.50%) Frame 3
P69E protein [Lycopersicon esculentum] pir||T06579 subtilisin-like proteinase (EC 3.4.21.-) p69e - tomato
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA06412.1| Score 288 E Value 7e-77 Identity 24.80% Align. Length 596bp (99.50%) Frame 3
P69C protein [Lycopersicon esculentum] pir||T06577 subtilisin-like proteinase (EC 3.4.21.-) - tomato
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0102J24
Clone
Clone name
hba-102j24
LE_HBa0102J24
P102J24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found