Clone Read LE_HBa0102K20_SP6_86918

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0102K20_SP6_86918
Primer
SP6
ID from Seq. Facility
LE_HBa_102_K20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
664 trimmed for vector and quality, 775 raw
Genbank Accession
DU077406
Sequence
>LE_HBa0102K20_SP6_86918 (raw untrimmed)
CTATTAAAAAAGACCAATTTCTCTGGTATTTCACTTTAATTTTGTGGATTAATCTTCATTAATGTATGGGTTCTTCACTCTTGGGATTCCTTTCTCCAAG
AATTCCTTTCAAAGTTGATTTCTAAATCACCCAATTCCAAGGGTTTTTTTTTTATTTTAATGGGTTTCTTCTAAACTTCAAATTGATGATAAATTGTGAT
TTCCTATGACTAATTTCGTGTAGATTGTTGGTTAAGTGATCTTAATTGATGAAAGTTCATGTAGATCATGTCACTTTCCCCAATTTCCCTAAATATTGGA
TTTTACTTAGAAATTGATGGGAATTGATCAATGTTTTTATTGTTAGACTTGTTTTATCGATTCTAATTCATCATGGACTGATGAATATTGGTTTATGTTG
GTTTCTTTTCATGGCCATGTAATCTCTGGTGAGGGTGTAGAGGTCGATCTAAAGAAGACGGATGCGGTTAGAAATTGGTCGAGACCTTTGACTCCCAACA
ACATAAAAAATTTCTTGGGTCTAGCTGGGTATTATGGAAGGGCTGTTGATAGATTTTCATCTATTTCTTATCCTTTGACATCCATGACCCAAAATAAGTT
GAAGTTGAGTAGTTGGAAGCTTGTGAAAAAGGTTTCCAAGAGTTGAAAGATAATCTTACCTCCGCTTTGAAATTGACTTTACCGGAGGGAAATGAAGGCT
TTGTAATGTTTTGTCATGCTTCCCAAGAGGTCTTGGGAATGAACCTCCTTCCATTCTTGGCAATGTGAAAACCCA
>LE_HBa0102K20_SP6_86918 (trimmed for quality and cloning vector)
TTTCTCTGGTATTTCACTTTAATTTTGTGGATTAATCTTCATTAATGTATGGGTTCTTCACTCTTGGGATTCCTTTCTCCAAGAATTCCTTTCAAAGTTG
ATTTCTAAATCACCCAATTCCAAGGGTTTTTTTTTTATTTTAATGGGTTTCTTCTAAACTTCAAATTGATGATAAATTGTGATTTCCTATGACTAATTTC
GTGTAGATTGTTGGTTAAGTGATCTTAATTGATGAAAGTTCATGTAGATCATGTCACTTTCCCCAATTTCCCTAAATATTGGATTTTACTTAGAAATTGA
TGGGAATTGATCAATGTTTTTATTGTTAGACTTGTTTTATCGATTCTAATTCATCATGGACTGATGAATATTGGTTTATGTTGGTTTCTTTTCATGGCCA
TGTAATCTCTGGTGAGGGTGTAGAGGTCGATCTAAAGAAGACGGATGCGGTTAGAAATTGGTCGAGACCTTTGACTCCCAACAACATAAAAAATTTCTTG
GGTCTAGCTGGGTATTATGGAAGGGCTGTTGATAGATTTTCATCTATTTCTTATCCTTTGACATCCATGACCCAAAATAAGTTGAAGTTGAGTAGTTGGA
AGCTTGTGAAAAAGGTTTCCAAGAGTTGAAAGATAATCTTACCTCCGCTTTGAAATTGACTTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.929573
Expected error %
0.161508
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 92 E Value 8e-21 Identity 55.70% Align. Length 298bp (44.88%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 92 E Value 8e-21 Identity 55.70% Align. Length 298bp (44.88%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0102K20
Clone
Clone name
hba-102k20
LE_HBa0102K20
P102K20
Clone type
BAC
Contamination
none
Estimated length
98,669
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found