Clone Read LE_HBa0120F13_SP6_87432

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120F13_SP6_87432
Primer
SP6
ID from Seq. Facility
LE_HBa_120_F13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
460 trimmed for vector and quality, 839 raw
Sequence
>LE_HBa0120F13_SP6_87432 (raw untrimmed)
CTAAAAATCCGCAAAATNCTCTAAGACTTCCTTTTAATGTCCTCACTCACGTCCCACTTGTCCTCAAGGAAATCTTAGTGTGTAAACTCCAGAATTTTTA
GCTTAGGCAATGTCGCGATTGCTAAAAACAAAGCAGGTTTCAGGGGAATACAATACAACTGTAACTCTTTCAAAATGGTAGGGAAGTGAGATTCATCATT
GAGATTTTGGTTTTTTCAAACTCGAAATAATCCATAAAGTAATCAGCATCCCTACTTCAGAAAGACCTGTACCTTAGAATGAGTGATTCAAGTTTATTAA
GGACATCAAACTTGGGAAACCAATTGCCGTTTGTAGGATGATTATTTGGTACCAGAATGTTGCAATCGAAGTGCTGAAGATTTGGGAACTTCCCAGAGCA
TCAATTGTGACTTGAGAATATGAGATATCAACTTGGGATAAAGCTATCAAGTATTATAACTTTTAACATTAATCTTCCAATTATTTCTATTTGGCTGATG
CATAAAGTTGTCCTTGCCGTCCTTTTCAAAGAAAGAACAACTGTCTATGCTTACATGTTTCAGCTTTGACATTTTTGGTTATTCTTGGCAATATTACCAT
GGAGAAAATTCTTTTTTATTCTCCTACTAATTCGAAATGTAATACTCATTTCTTATAAGTGTATAAAACTTGACAATTCGAACTGTTAATCATATCCTTT
TTTTCTGCATTTACTTCTTTGCTCTTTACATTTTATCCTTTCTATATTTTTTTTTTTTATTTTCCTTTTTTATTTTATATCCTAGTTATATTTTCTATTT
TTCTTTTTCTCTTTTCCTGTTTTTGTTTACTTTCACTGG
>LE_HBa0120F13_SP6_87432 (trimmed for quality and cloning vector)
GTCCTCACTCACGTCCCACTTGTCCTCAAGGAAATCTTAGTGTGTAAACTCCAGAATTTTTAGCTTAGGCAATGTCGCGATTGCTAAAAACAAAGCAGGT
TTCAGGGGAATACAATACAACTGTAACTCTTTCAAAATGGTAGGGAAGTGAGATTCATCATTGAGATTTTGGTTTTTTCAAACTCGAAATAATCCATAAA
GTAATCAGCATCCCTACTTCAGAAAGACCTGTACCTTAGAATGAGTGATTCAAGTTTATTAAGGACATCAAACTTGGGAAACCAATTGCCGTTTGTAGGA
TGATTATTTGGTACCAGAATGTTGCAATCGAAGTGCTGAAGATTTGGGAACTTCCCAGAGCATCAATTGTGACTTGAGAATATGAGATATCAACTTGGGA
TAAAGCTATCAAGTATTATAACTTTTAACATTAATCTTCCAATTATTTCTATTTGGCTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958077
Expected error %
0.127751
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD29727.1| Score 69 E Value 1e-26 Identity 57.70% Align. Length 411bp (89.35%) Frame 2
hero resistance protein 3 homologue [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD29726.1| Score 67 E Value 4e-25 Identity 55.80% Align. Length 411bp (89.35%) Frame 2
hero resistance protein 2 homologue [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120F13
Clone
Clone name
hba-120f13
LE_HBa0120F13
P120F13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found