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Clone Read LE_HBa0139C11_T7_88053

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0139C11_T7_88053
Primer
T7
ID from Seq. Facility
LE_HBa_139_C11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
831 trimmed for vector and quality, 894 raw
Genbank Accession
DU076440
Sequence
>LE_HBa0139C11_T7_88053 (raw untrimmed)
TAGATCGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCCCATATACAAGTTGGTATGGAGACATACCTATGGGAGTCTTATATG
CTGTCCAGTAGGCCCAAAGAGCATCATCAAGCCTCCTTGACCAATCCATTCTACTAGCGTTCACTGTTTTTGACAATATCTGTTTGATCTCCCGATTCGA
CACTTCAACTTGCCCACTAGTTTGAGGGTGGTAAGGAGTGGACACATTATGGCAAACCCCATATTTCTCCAATAACCCCTTGAACAATCTGTTGCAGAAG
TGGGAGCCCCCATCACTAATAATGGCCCTTGAGGTGCCAAAACGAGAGAATATATTCTTTTTCAAGAATGCAGTGACACTCTTCCCTTCATTGTTTGCAA
GGGTGATGGGTTCGACCCATTTAGATACATAATCAACTGCCCCTAGAATGTAATTCATTCCATGAGAACTCACAAAAGGGCCCATAAAGTCAATACCCCA
AACATCAAATAACTCAATCACAAGAATGAGGTTTAGAGGGAGCTCTTGCTTTCTTGAAATGCCGCCATCTCGTTGGCATCTGTCACATGCTTTAGCAAAC
TCATGAGCATCTTGATGAAGAGTTGGCCAATAGTAACCACATTGTAATATTTTATGAGCGGTTCGGATACCACTGTGATGTCCATCAACGGGTGAGGAAT
GGCATGCCTCCAACACACTCAACATCTCACATTCTGGCACACAACACCGAATAAGCCCGTTGGCACAACTCCTATACAAGTATGGTTCATCCCCAAAGAA
ATTCTTCACATCGTACATGAACTTTTTTCTTTGATGAAAGGACAAGTCTGATGGAACAATATCACTAGCCAGATAGTTAACAAATTCTGTGATC
>LE_HBa0139C11_T7_88053 (trimmed for quality and cloning vector)
AGCTTTCCCATATACAAGTTGGTATGGAGACATACCTATGGGAGTCTTATATGCTGTCCAGTAGGCCCAAAGAGCATCATCAAGCCTCCTTGACCAATCC
ATTCTACTAGCGTTCACTGTTTTTGACAATATCTGTTTGATCTCCCGATTCGACACTTCAACTTGCCCACTAGTTTGAGGGTGGTAAGGAGTGGACACAT
TATGGCAAACCCCATATTTCTCCAATAACCCCTTGAACAATCTGTTGCAGAAGTGGGAGCCCCCATCACTAATAATGGCCCTTGAGGTGCCAAAACGAGA
GAATATATTCTTTTTCAAGAATGCAGTGACACTCTTCCCTTCATTGTTTGCAAGGGTGATGGGTTCGACCCATTTAGATACATAATCAACTGCCCCTAGA
ATGTAATTCATTCCATGAGAACTCACAAAAGGGCCCATAAAGTCAATACCCCAAACATCAAATAACTCAATCACAAGAATGAGGTTTAGAGGGAGCTCTT
GCTTTCTTGAAATGCCGCCATCTCGTTGGCATCTGTCACATGCTTTAGCAAACTCATGAGCATCTTGATGAAGAGTTGGCCAATAGTAACCACATTGTAA
TATTTTATGAGCGGTTCGGATACCACTGTGATGTCCATCAACGGGTGAGGAATGGCATGCCTCCAACACACTCAACATCTCACATTCTGGCACACAACAC
CGAATAAGCCCGTTGGCACAACTCCTATACAAGTATGGTTCATCCCCAAAGAAATTCTTCACATCGTACATGAACTTTTTTCTTTGATGAAAGGACAAGT
CTGATGGAACAATATCACTAGCCAGATAGTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.975968
Expected error %
0.450964
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF24529.1| Score 337 E Value 3e-91 Identity 18.90% Align. Length 830bp (99.88%) Frame 2
F7F22.15 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD23707.1| Score 325 E Value 9e-88 Identity 18.50% Align. Length 830bp (99.88%) Frame 2
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||G84476 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0139C11
Clone
Clone name
hba-139c11
LE_HBa0139C11
P139C11
Clone type
BAC
Contamination
none
Estimated length
102,043
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found