Clone Read LE_HBa0143O06_T7_89387

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0143O06_T7_89387
Primer
T7
ID from Seq. Facility
LE_HBa_143_O06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
584 trimmed for vector and quality, 754 raw
Genbank Accession
DU078109
Sequence
>LE_HBa0143O06_T7_89387 (raw untrimmed)
CTTGGACCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTC
GTCTCTCCGTGCCTGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAA
TACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGA
ACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAATCTCCTTAACTGAGTGAGCTCGC
CTCTTTATTGTCATTGATCATAAGAGTAGAGAAACAGAACTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACTATCTGTTCTTGAATTT
GATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAG
ATGGAAACCCCATTGAAATATAGAGCTGAGAATCATGCCCTGCAGTACAATGGATACAACATGATTCTTTACATGAGCCTGCCTTCATGGAACAGCTAAA
TGGCTTTCGAAAAATACCTGGAGCAATGAAGTTTCCAGAATGAAAGGGCCTTTC
>LE_HBa0143O06_T7_89387 (trimmed for quality and cloning vector)
AGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCTGAATAAAGCCTAAAACATGCAGTGGAGGAT
TGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAA
TGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTA
CGTGAGATCGTTGTAGTGTGGAATAAAGGCCAATCTCCTTAACTGAGTGAGCTCGCCTCTTTATTGTCATTGATCATAAGAGTAGAGAAACAGAACTCAC
TAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACTATCTGTTCTTGAATTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATT
TAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCCATTGAAATATAGAGCTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.977865
Expected error %
1.41036
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g04500.1 Score 227 E Value 3e-60 Identity 21.80% Align. Length 485bp (83.05%) Frame 2
68418.m00449 glycosyltransferase family protein 47 low similarity to Exostosin-like 2, Homo sapiens [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g55830.1 Score 74 E Value 4e-14 Identity 11.00% Align. Length 452bp (77.40%) Frame 2
68416.m06203 glycosyltransferase family protein 47 similar to exostose-related protein 2, Homo sapiens, PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus [GI:10443633]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_469329.1| Score 231 E Value 7e-60 Identity 21.00% Align. Length 500bp (85.62%) Frame 2
putative exostoses [Oryza sativa] gb|AAK14423.1| putative exostoses [Oryza sativa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB85556.1| Score 227 E Value 1e-58 Identity 21.80% Align. Length 485bp (83.05%) Frame 2
putative protein [Arabidopsis thaliana] pir||T48446 hypothetical protein T32M21.100 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0143O06
Clone
Clone name
hba-143o6
LE_HBa0143O06
C11HBa0143O06
P143O06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found