Clone Read LE_HBa0149C09_SP6_89584

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0149C09_SP6_89584
Primer
SP6
ID from Seq. Facility
LE_HBa_149_C09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 616 raw
Sequence
>LE_HBa0149C09_SP6_89584 (raw untrimmed)
TTGGTGTGGGGAGTGGTGGGGGAAAATATAGTTTTTGACTATGAAGAATGAACCACGCATTCAACTCGCCTCTACAGAAGTTGAACCAAGTATTTCATTC
CCTTCTAATATAAGATGAGTCTAAATCGACTCTTTTTTTTTTATTTTTTTGGTAATCTACTTCGCAATTACAGTATATTACTACGATATAAATTCGAAGA
TATTTTTTTATATAGATATTTATATTTATGAGTTTTAATATTCTTATTAGTTCTATATCTAAACATACTTCTCATGTTCAATCAATTATCCACTTACTTA
GTATTTAGCGTGCAAATACATCCCAACTCATCTCCTTCTTACTCTTACATTTGCTCATATCTCGTACTCTATAATCTATAGGCTATTCTCTTGGGATATT
ATCTTCATCTACTATCTTACATATAGCCTATAGTATCATGAAATGAAGACCCATAAGACCATGCGGACAGAATCATTGCTTGTGGACTGCGTCATATTTT
TAATATAAAATGACTTAATAGATATATGTAATATATCCCTTTGTGGGATATTATATTTATTATTTTGCTTATATTTTTACTATAAACTTTGGCTACGTGT
CCTTTTTCCCTATTTA
>LE_HBa0149C09_SP6_89584 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0149C09
Clone
Clone name
hba-149c9
LE_HBa0149C09
C08HBa0149C09
P149C09
Clone type
BAC
Contamination
none
Estimated length
99,211
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found