Clone Read LE_HBa0007B09_SP6_91072

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0007B09_SP6_91072
Primer
SP6
ID from Seq. Facility
LE_HBa_007_B09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
388 trimmed for vector and quality, 825 raw
Sequence
>LE_HBa0007B09_SP6_91072 (raw untrimmed)
AACCGGTGTTGTTCGCAGCTTCACACTCATGAATATNTAAATTTATNAAATATTTGGTNATAAAAAAAATATTAGTTAATTTAGCCGTTGAAGATAGANT
GAATTATTGTAGTGCTATCGCTACTCCCTTCCTCGTACAAAAGAAAGAAGATCCTGGTGCGTTCATTATCCCTTGTACAGTTGGGTCATTACATTTTGCG
AAAGCATTATGTGATCTGGGGGCAAGCATAAATCTCATGCCCCTCTCAATTTACAAGACGTTGAGATTGGGGAATCCAAAACCCACTACGATGCGGCTAC
TGATGGCTGATCGGACAGTGAAACGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTGGAATCATTCATCTTTCCGGCTGATTTTGTTATTCTTGA
TTGTGAGGTCGATTTCGAAGTGCCTATTATTCTTGGGAGGCCATTCCTTGCTACAGGTAGAGCCTTAGTTGATATGGAGAAGGGACAGATGACTTTCTGA
TTGAATAATGAAAAAACAACCTCCAACACCCCCCACACCCCGACGCAGAGCGATGAACTCCANTCGGTAACTGCCAAAGACCACATAGAAAAGATGAAGA
ATGAGACTGAACTTAAAAATGTTATATAAGATTTTGTGGTGGGGGATTTGGAGCTTGTATACAGTTTCGGTGTGCCTCTTTCTTTCTGTGTATCTTTAGT
TCAAATTGGACTTGTTTTTATTTGACTACCATAGCATTCTCTATGGGAGGCTTTGAGTCTAAGCTCCCTGGAAGGGAATGGGGGTTCTTGAATGATCAAA
GTAAGAAACACACCCTTCCATTCGA
>LE_HBa0007B09_SP6_91072 (trimmed for quality and cloning vector)
AGTGCTATCGCTACTCCCTTCCTCGTACAAAAGAAAGAAGATCCTGGTGCGTTCATTATCCCTTGTACAGTTGGGTCATTACATTTTGCGAAAGCATTAT
GTGATCTGGGGGCAAGCATAAATCTCATGCCCCTCTCAATTTACAAGACGTTGAGATTGGGGAATCCAAAACCCACTACGATGCGGCTACTGATGGCTGA
TCGGACAGTGAAACGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTGGAATCATTCATCTTTCCGGCTGATTTTGTTATTCTTGATTGTGAGGTC
GATTTCGAAGTGCCTATTATTCTTGGGAGGCCATTCCTTGCTACAGGTAGAGCCTTAGTTGATATGGAGAAGGGACAGATGACTTTCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.972646
Expected error %
0.288944
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T12086 Score 122 E Value 2e-27 Identity 16.70% Align. Length 353bp (90.98%) Frame 2
hypothetical protein - fava bean (fragment) dbj|BAA22788.1| retrotransposon-like gene~the first amino acid was determined to be leucine [Vicia faba]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T12084 Score 122 E Value 3e-27 Identity 17.90% Align. Length 335bp (86.34%) Frame 2
hypothetical protein - fava bean (fragment) dbj|BAA22786.1| retrotransposon-like gene~the first amino acid was determined to be glycine [Vicia faba]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0007B09
Clone
Clone name
hba-7b9
LE_HBa0007B09
P007B09
Clone type
BAC
Contamination
none
Estimated length
124,026
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found