Clone Read LE_HBa0007F15_SP6_91276

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0007F15_SP6_91276
Primer
SP6
ID from Seq. Facility
LE_HBa_007_F15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
444 trimmed for vector and quality, 864 raw
Sequence
>LE_HBa0007F15_SP6_91276 (raw untrimmed)
CCGGCTTACATTCACTAATTTCGAAACTTCAACTTATGGCAGACCCCGGACCAGGTCCTTAGAAATCAGTTTATTCCGTAAAGATGAGCTCACATGCCCT
AGCCTAGTATTCCAAAGATCTACATTCTCATTCTGAGCACTAAGACATGTTAGGTCATCTCCATGAGACGTTTCTAAGTTGGCCACATACATGTTTTTAC
TTCTGTAAGCAGTGAGAATTACCTTCTTTGTAGTTAGATTCACCACAATGCACTTCTCAGAAGTAAATTTGACTTCATTTCCTTTGTCACAGATTTGATA
CACGCTCAACAAACTGTACTTCAACCCATCCACATGATACACATTGTCAATTGAATCTTCAAGAGATCTTCCCACTTTGCCAACTCCCAAAATGTACCCC
TTCTTTCCATCACCAAAAGAGACACCTCCTCCTTGAAGTGTCTCGAGTGAGAGGAAATTTTTTACATCACCAGTCATATGTTTAGAGCATCCATTTTTTT
TTTTTTATTTTTTACTATATAACCTAACACCCCCCCCCCCCCCCTAATCTANAAGTAGNACATGGCGTCCTCCTCCGCTCTGTGTACCCCAAAAGGCTGA
CTTTCGGAGNGTTNTGATTTTATTTTTTTTCTTTTTGGTCTAATTTTTAAGCTTTTTTTTACCTAATAATTTCTGAATCAGTGCCCTAAATTTTTCTTCT
AATTAACTTTAGAAGTCGAATCCATTATCCTATTTTATCATTTTTTTCTTAATATTGGAATAAGGTCGCTCTATATGACCATATATAAGACGGATTATAG
CTTTATTATATATTTTTCTAACTCTTTATTCATTTTAATCTTTTATATAACTAATATTTTTTTT
>LE_HBa0007F15_SP6_91276 (trimmed for quality and cloning vector)
GGCAGACCCCGGACCAGGTCCTTAGAAATCAGTTTATTCCGTAAAGATGAGCTCACATGCCCTAGCCTAGTATTCCAAAGATCTACATTCTCATTCTGAG
CACTAAGACATGTTAGGTCATCTCCATGAGACGTTTCTAAGTTGGCCACATACATGTTTTTACTTCTGTAAGCAGTGAGAATTACCTTCTTTGTAGTTAG
ATTCACCACAATGCACTTCTCAGAAGTAAATTTGACTTCATTTCCTTTGTCACAGATTTGATACACGCTCAACAAACTGTACTTCAACCCATCCACATGA
TACACATTGTCAATTGAATCTTCAAGAGATCTTCCCACTTTGCCAACTCCCAAAATGTACCCCTTCTTTCCATCACCAAAAGAGACACCTCCTCCTTGAA
GTGTCTCGAGTGAGAGGAAATTTTTTACATCACCAGTCATATGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.950122
Expected error %
0.344369
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE03782.2| Score 87 E Value 2e-16 Identity 12.00% Align. Length 440bp (99.10%) Frame 1
OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)] ref|XP_471876.1| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM94552.1| Score 84 E Value 9e-16 Identity 12.00% Align. Length 440bp (99.10%) Frame 1
putative polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAP54118.1| putative polyprotein [Oryza sativa (japonica cultivar-group)] ref|NP_921831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0007F15
Clone
Clone name
hba-7f15
LE_HBa0007F15
P007F15
Clone type
BAC
Contamination
none
Estimated length
79,761
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found