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Clone Read LE_HBa0029C17_SP6_91904

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0029C17_SP6_91904
Primer
SP6
ID from Seq. Facility
LE_HBa_029_C17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1385 raw
Sequence
>LE_HBa0029C17_SP6_91904 (raw untrimmed)
CATGATGACGCTCGACGTACTGTNAGACTCNCNCCNATTAGGACGAGGACGCTACTCTGTGCTACACGCNCACAGTGTGATAGTCGTGACGCGGCGATNG
CTGAATGAAATGCTGGCTGAAACAGTGNGCACACTCGTCCTGCGATGCAGGCGAGTAGCGAGCGGTGANTAGCCTAGGCGTGAGGAGGAGATGTTAGGNC
TNTGNGACTGAGCTCGTCACAGCCTCGCGATCNNGCGTCTGTGTAGACAGCAGTGCTGCACACACAGAGTNTATTTAGCATTGGGGTGATTCCAGTCAGT
GGGNCGACTATATCTNATGAGATCGCAGTTGGTAGCGCNACGCTAGATAGGAACGNGTGACAGGAAGGCGATGCGAGTGCGTAGTGGGNACGTGATGTGT
ACGTACTCNTGTAGTATAGATGACGTAGGAGGATGNCATCATAGATAGTANATANAGTTNCGCGGCTTTCTTCGCTGTGCAATGCATCGCCAGTCACTAC
TATAAACATTCGCATGATCCTCNCANATAAGCTTCATCTGTATTCATTCGTGATACGCTATAGCTCCAGTNACTTGAGACATACATCTGCTATTGCAGAG
CTCCCCTCGTAGCGTGATCTCGTACTCATGATCTTCTCTATCTCCACTGCGTCAGAANCGCGTGGAGACTANGACTCTCGCTGGTCTGTGGACTACAGAC
ACGCGTCGTGTCTTTACTCTTGTCCGCACACCCTCCCTCATCTGGACTATATGTGACACTACTCTCGATCACACTGAGAAACAACACGATGAGCGANCTG
CTCGCGAGTGCNTGTGNCAATATCCGCTCTNTATCGACCACATAGTGGCTNGTGTCANATGCTATTCGACACNTGCCGTGTCGTGGCGCACCATACCAGC
TCGTGACTGATCTCNCGTCTGTGGCTCTCTGTACTACGCGTAACCGGATGANCTCTCTCACTCGAACGTCTAAGTGCTNATCTTCGCTCCTCTACTTCTC
TCTCTATAGTTTCTACTACTACTCGTNGCNTACACGCTGTGNGCTACTACCTTGCCTCTCGCTACTAGTATACCTCTACTATCTACATATATCTCATACA
CTATTACTTATGTNTAACATNCGTATCATATACTCGTGAANTGATACATACTCGTCACATGTGCNCATGTGCCTCGTCTTATCTGCCAGCTACCGCACCG
AGCGCTGCTCGCTNACGCGTATCACCAGTCGTGACTGNCTATCGGTCCGCAGCACACTGTGACGNCGACTATACACGTAGCCTACTTACANCNTGCTCTT
TNCATATACACNGCTACAACACATTGAACACGTCTCCAATACTTGAGANTCGTAATATCNNTCTCGTTCGCAGCATCTCGCACCG
>LE_HBa0029C17_SP6_91904 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.3129
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0029C17
Clone
Clone name
hba-29c17
LE_HBa0029C17
P029C17
Clone type
BAC
Contamination
none
Estimated length
96,128
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found