Clone Read LE_HBa0029N03_SP6_92404

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0029N03_SP6_92404
Primer
SP6
ID from Seq. Facility
LE_HBa_029_N03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
239 trimmed for vector and quality, 886 raw
Genbank Accession
DU054707
Sequence
>LE_HBa0029N03_SP6_92404 (raw untrimmed)
GGGGGTCCTAGAAATCCTCGTCGNTGCTATGAGGTTCTAGAACGAACTTCCAGAATGGGGAGGNGAATTAGAGCTCCTCTATCCTTTAAGGTGGGACAAA
GGAATNNAATAGAATGTGACAATCCCTTTAGGGGGGAGTTTTGTATAAGCGTCAGCTATGTAAGTAGACTTCAAAGGAATAAAGTGGGTAGACTTAGTAA
TCCTTTCAAAATTAACCCATATGGAGTCATGATGTCTCATAGTCTTCGGAAGAACAACCATGAAGTCCATATTAATGGCCTCAAATTTCCAAGTTGGAAC
CTCAATAATTTGATTAAAAGCAACAAGCTTGATATGTTCTGCCCTAACATGTTAACAACTAGGACATTTGACCATATATTCTACAATATCCTTCTTCATT
CCATCCCACCAATATATCTTGTTAAGGTCATGATACATCTTGGAGGAACCTGTTTTGTGGGGAAAATCTAGAACCATGATTCTCTACACCCCACACTTGC
TCGTCTCTCATTAAATAATAAAAAACACGAGCTTTCTTCGGACCCATCTACCTATTCATACCCCATCAAACATATACACTATTCCTATTCCCTCTCACTC
TTTTTCTCCATCTTCCCTTACTATATGTCCTCTCTCTTAGTTTCTCTATTATGATCATGCAATCTTCTTTAATCTTCATTCCCTGTCTCATATAACTTAT
ATTATCAATTCTTTTCTGCTGTCTGTCATTTAACGCCATGTTACTTCAATATTATGAATCTTGTACGTACCTACTCAATTTAATGCATTATTAATCATAA
CGTTCTGACGTTATGATTTGTTCTTGTCCCTTTTTTACTCTTTTTTCTCTTTTTTATGTCTTATTNTACTTTTTTCTTTCTTTTTC
>LE_HBa0029N03_SP6_92404 (trimmed for quality and cloning vector)
GTAAGTAGACTTCAAAGGAATAAAGTGGGTAGACTTAGTAATCCTTTCAAAATTAACCCATATGGAGTCATGATGTCTCATAGTCTTCGGAAGAACAACC
ATGAAGTCCATATTAATGGCCTCAAATTTCCAAGTTGGAACCTCAATAATTTGATTAAAAGCAACAAGCTTGATATGTTCTGCCCTAACATGTTAACAAC
TAGGACATTTGACCATATATTCTACAATATCCTTCTTCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.937651
Expected error %
0.534068
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 94 E Value 9e-19 Identity 17.30% Align. Length 236bp (98.74%) Frame 2
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 94 E Value 2e-18 Identity 17.50% Align. Length 233bp (97.49%) Frame 2
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0029N03
Clone
Clone name
hba-29n3
LE_HBa0029N03
C08HBa0029N03
P029N03
Clone type
BAC
Contamination
none
Estimated length
105,794
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found