Clone Read LE_HBa0038E17_SP6_92768

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0038E17_SP6_92768
Primer
SP6
ID from Seq. Facility
LE_HBa_038_E17-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 1017 raw
Sequence
>LE_HBa0038E17_SP6_92768 (raw untrimmed)
CCGCGCGGGTATTCCCCTACTTTTACTATTTTCCACATTCGACAAATTTCTCTTCTATAATCACATCTTATATTTAATAGCACACTCAAAACCCACTGCA
ACACACCAAAACATAGTCTCTAGCTACACAAAATCAGCAACATACACTCTTATTTTAAGCTCACATAGGTGCTATTATATAGACATACTGATATAGGGTA
CTTACCTACACCCAAATCCACTGAAAGTACTCTAAACTCTGAAGCTT
TTTAAAACATAACACCATGACCTAAGAAAGAGTATATACTAACTCTCTTAAAT
ATAACATCTTGTCTGGCCTTTATGATCTTTAATTCTAATAATGACCCAATTTAATTCTCAAAGTGGACTTTGCCACTATGTCCGATCTACATTTTCTTCT
TACTCCCTTTTGGCCATTAACACTGTCTTCCTATGAGAAGCTACTAGACTAGAAAACGATTCTTGGTAACGATCTGCAGGTTCGTAAGTCCAAATTTGAT
CTAGCCTCAAAAAAGCAGTATACCATAGCCCAAGCGTACATCTCCGGATCTAGATTAAGTGCATATTACAGGAATAGAATAAACACAACGTAAACTTACT
ATTAATACACCATCCCGTGGCATCTTCTCTGAGTCTCCTTCTTCTTCTCTTTCCATCATACCTGTTACCGAGATATACTCTAAGGTGGTACGAGCAATAA
AAATTAAGGCCACAAAGATTGATATTCATGCTCGTAGGCTTGGCTGGGACTTTTGAACCTAAAACCCTTCTCCCTCTTCTTGCCCGAGTTTCAATTAAGT
AAAACATCAAAACCATACACTTAGTGCTTTTTAATATTCTGCAGATATTCATGCATCTATCCTTGCTATTTTACAATTAACATATTATACGAACAAGCTC
ATCTTCACCGTTCTCTACTTGGACGCTCTCCACACAGCACCCAAACACATCTTCCTCCTCACACCGTTGCCCTTAATGAGTTCAAACTATTCCGTTCTTC
AGGCCAAGTACGATCAT
>LE_HBa0038E17_SP6_92768 (trimmed for quality and cloning vector)
TTTAAAACA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.168949
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0038E17
Clone
Clone name
hba-38e17
LE_HBa0038E17
P038E17
Clone type
BAC
Contamination
none
Estimated length
119,698
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found