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Clone Read LE_HBa0043C20_SP6_93446

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0043C20_SP6_93446
Primer
SP6
ID from Seq. Facility
LE_HBa_043_C20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
608 trimmed for vector and quality, 838 raw
Genbank Accession
DU054911
Sequence
>LE_HBa0043C20_SP6_93446 (raw untrimmed)
GGTATTTTGCGTGGGGCGCGGTTGGAATTTCCGTATAACTTGTCATTCTCTAAGAAAGACATCTGATAAATGCAAAGTCTTGGGACTTTGATAGATGTCC
TCACTTGCGTCCCATTCGTCCTCAAGGAAATTAGATTCTATAATCTGTAGAATTTCAAGCTCAGGCAATGTCGTGATTGCTAAAAACAAAGTAGGTCTCA
GGGGAAACCTATGCAACTGTAACTATTTCAATCTTGTAGGGAAGTGATATTCATTGGGATTTTGAGTTTTTTCAAACTCAATCCAGACAGTTATTAGTAC
TGCTCCAGACATACCTGCAACGTAGAATTAGTGATTCAAGTTTATTAAGGACATCCAACTTGGGAAACCAATTGCCGTTTGTAGGAGGATCATTCGGTAC
CAGAATGTTGCAATCTAAGTGCTGAAGATTGGGAACTTCCCTAGAGCATCAAATGTGCCTTGAGAATATGAGATATCAACTAGGGATAAAGTTTTCAAAT
ATTCTAACTTTGAACACTCAGCTTCCAATAATCTACTTGGCTGATGCATAATGTTGTTCTTGTCCTTTTCAAACAAAGAACTAGCTTCGATGCTCACATG
TTTCAGCTTTGACAGTTTCCATTATTCTGGGAAATTGTGCCTTGGTGGAATACCTGTTTAAGGATTCCACAGAGTCCCCATATTCTAGAGGTTCAACGAC
CAAAATGGGAGATAATTTTTCTTATGTTAGAAACTTCAAAAACCCCCATATGAAAAATGGAACCCTATTTCCTTCCATTTGATGGACCTATTCCAGCAAT
ATGTATACCCATGTATCCACCCCCTTTGTCGGGTATTT
>LE_HBa0043C20_SP6_93446 (trimmed for quality and cloning vector)
AACTTGTCATTCTCTAAGAAAGACATCTGATAAATGCAAAGTCTTGGGACTTTGATAGATGTCCTCACTTGCGTCCCATTCGTCCTCAAGGAAATTAGAT
TCTATAATCTGTAGAATTTCAAGCTCAGGCAATGTCGTGATTGCTAAAAACAAAGTAGGTCTCAGGGGAAACCTATGCAACTGTAACTATTTCAATCTTG
TAGGGAAGTGATATTCATTGGGATTTTGAGTTTTTTCAAACTCAATCCAGACAGTTATTAGTACTGCTCCAGACATACCTGCAACGTAGAATTAGTGATT
CAAGTTTATTAAGGACATCCAACTTGGGAAACCAATTGCCGTTTGTAGGAGGATCATTCGGTACCAGAATGTTGCAATCTAAGTGCTGAAGATTGGGAAC
TTCCCTAGAGCATCAAATGTGCCTTGAGAATATGAGATATCAACTAGGGATAAAGTTTTCAAATATTCTAACTTTGAACACTCAGCTTCCAATAATCTAC
TTGGCTGATGCATAATGTTGTTCTTGTCCTTTTCAAACAAAGAACTAGCTTCGATGCTCACATGTTTCAGCTTTGACAGTTTCCATTATTCTGGGAAATT
GTGCCTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96451
Expected error %
0.288955
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD29727.1| Score 129 E Value 7e-29 Identity 15.70% Align. Length 593bp (97.53%) Frame 2
hero resistance protein 3 homologue [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD29725.1| Score 129 E Value 7e-29 Identity 16.60% Align. Length 584bp (96.05%) Frame 2
hero resistance protein 1 homologue [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0043C20
Clone
Clone name
hba-43c20
LE_HBa0043C20
P043C20
Clone type
BAC
Contamination
none
Estimated length
83,894
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found