Clone Read LE_HBa0108E14_SP6_95834

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108E14_SP6_95834
Primer
SP6
ID from Seq. Facility
LE_HBa_108_E14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
432 trimmed for vector and quality, 864 raw
Genbank Accession
DU057047
Sequence
>LE_HBa0108E14_SP6_95834 (raw untrimmed)
TGTAGCCCTACCCCGGGGGCGGGGCCGCGCGGAGCCGGGGCTTNCGNCCNCCCGGGAACCGGGGTTNCTGAGACGGGAGGATTTTTAGCTTGTGTGGAGG
CAAGATCTTCTTTCCTTGACAAGATTAAGGGAAAGCAGTTTAATGATGAGAAATTGATCCGGATCCGAGATAAAGTGTTGCGAGGAGAGGCTAAGGAAGC
ACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAATACTATTCTGACAGAGGCTCATAGTTCA
AGGTATTCGATACATCCGGGTGCAACCAAGATGTACCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTTGACTTTATTGCCA
AATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAGAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAAAGGATTGCAAT
GGATTTTAGTTGGCCTTCCAAAGACAATGAGTAAGAATGAACTCTTTTGGGTGATTGTTGAATGGCTAACTAAATATGCTCATTTCATTCCGGTCAAGGT
GGACTTTCAATGCAGAGAAATTTAGCCAAACTTTACTTCTCGGAAGGGGTGCCATTTCATGGGGTTCCCCCCTCCATTAAATCATATAAGAGGGTACGCC
ACGTTTATCTCCTAAGTTTGGGGAAAAACTGCAATGGCGGAATTGGGGAATAAGGATGGACCATTGATAACCCCATACCACCCCCCAAACCAAATGGTCT
CTCTGAATCCAAACATTTTCAAATGTTTTTAAGGGTATTGCATCCGCCGACAAGTGATCAAACT
>LE_HBa0108E14_SP6_95834 (trimmed for quality and cloning vector)
GGAGGATTTTTAGCTTGTGTGGAGGCAAGATCTTCTTTCCTTGACAAGATTAAGGGAAAGCAGTTTAATGATGAGAAATTGATCCGGATCCGAGATAAAG
TGTTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAATAC
TATTCTGACAGAGGCTCATAGTTCAAGGTATTCGATACATCCGGGTGCAACCAAGATGTACCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAG
CGTGATATTGTTGACTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAGAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCTG
AATGGAAGTGGGAAAGGATTGCAATGGATTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961824
Expected error %
0.396731
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 199 E Value 2e-50 Identity 21.00% Align. Length 422bp (97.69%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 199 E Value 2e-50 Identity 20.80% Align. Length 422bp (97.69%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108E14
Clone
Clone name
hba-108e14
LE_HBa0108E14
P108E14
Clone type
BAC
Contamination
none
Estimated length
92,457
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found