Clone Read LE_HBa0108N12_SP6_96262

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108N12_SP6_96262
Primer
SP6
ID from Seq. Facility
LE_HBa_108_N12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
697 trimmed for vector and quality, 813 raw
Genbank Accession
DU057339
Sequence
>LE_HBa0108N12_SP6_96262 (raw untrimmed)
TTTCCGTTTTTTTGGCAGTATCGCANGTTGGGGATATCCTGAAGGTTTATTGGTTGATTCCAGGAACGCAAAGGTACTTGTGCATTTATCTCCTCCCCTG
ATTTAGATCATCAGAACTGGTCGATGCTTGATGCACCATTGACTAACCAAATCTAATGCTTCCAGGTTGTTTCACCTTTGAGCGGACATATTGACTACTC
ATTTGCGTCAGCATGGCATCCTGATGGCCTAACTTTTGCAACTGGCAACCAGGATAAAACCTGCAGAGTATGGGATATACGGAACCTGTCTAAATCAGTT
GTTGCTCTGAAGGGTAACCTTGGAGCTATTCGGTCAATCCGCTACACATCTGATGGAAGATTCATGGCAATGGCAGAACCTGCAGATTTCGTTCATGTTT
TCGATGTAAAAAATGGCTACGAGCAGGAGCAAGAAATTGATTTCTTTGGTGAGATATCAGGTCTGTCTTTTAGTCCTGATACAGAGTCCCTTTTTGTCGG
AGTCTGGGATCGCACATATGGTAGCCTTCTTGAGTTTGGACGGCGGCACAACTACTCATACCTTGATACAATTATGTAAACACTCTCTTGAATGCTGCTT
TGGGTATGTTTACTTGGCTTGAAGTGGCGCTGGCTGAACTTTGTAAAACGAGTAGCATAGTCAGGAGTTAGTAGTGGATTTGGCTGTAAATTGGTCATGT
TGTGCAATTTAAGTTTGTCACATAAATTGTTGTGCACCATTTTCTAAATATCAGAAGATGTAGAAATGGAGGAATGTATAAAAGAGGGGAAAACTTCCAG
TGATGTGAACCTG
>LE_HBa0108N12_SP6_96262 (trimmed for quality and cloning vector)
ATCCTGAAGGTTTATTGGTTGATTCCAGGAACGCAAAGGTACTTGTGCATTTATCTCCTCCCCTGATTTAGATCATCAGAACTGGTCGATGCTTGATGCA
CCATTGACTAACCAAATCTAATGCTTCCAGGTTGTTTCACCTTTGAGCGGACATATTGACTACTCATTTGCGTCAGCATGGCATCCTGATGGCCTAACTT
TTGCAACTGGCAACCAGGATAAAACCTGCAGAGTATGGGATATACGGAACCTGTCTAAATCAGTTGTTGCTCTGAAGGGTAACCTTGGAGCTATTCGGTC
AATCCGCTACACATCTGATGGAAGATTCATGGCAATGGCAGAACCTGCAGATTTCGTTCATGTTTTCGATGTAAAAAATGGCTACGAGCAGGAGCAAGAA
ATTGATTTCTTTGGTGAGATATCAGGTCTGTCTTTTAGTCCTGATACAGAGTCCCTTTTTGTCGGAGTCTGGGATCGCACATATGGTAGCCTTCTTGAGT
TTGGACGGCGGCACAACTACTCATACCTTGATACAATTATGTAAACACTCTCTTGAATGCTGCTTTGGGTATGTTTACTTGGCTTGAAGTGGCGCTGGCT
GAACTTTGTAAAACGAGTAGCATAGTCAGGAGTTAGTAGTGGATTTGGCTGTAAATTGGTCATGTTGTGCAATTTAAGTTTGTCACATAAATTGTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977144
Expected error %
0.306572
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g13340.1 Score 251 E Value 3e-67 Identity 82.60% Align. Length 538bp (77.19%) Frame 1
68416.m01679 WD-40 repeat family protein contains Pfam profile: PF00400 WD domain, G-beta repeat (3 copies, 1 significant); similar to Trp-Asp repeat protein (PIR:T40094) [Schizosaccharomyces]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g55680.1 Score 250 E Value 6e-67 Identity 81.20% Align. Length 538bp (77.19%) Frame 1
68414.m06374 WD-40 repeat family protein contains 2 (1 significant) WD-40 repeats (PF0400); similar to Trp-Asp repeat protein (PIR:T40094) [Schizosaccharomyces]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM98109.1| Score 251 E Value 1e-65 Identity 82.60% Align. Length 538bp (77.19%) Frame 1
At3g13340/MDC11_13 [Arabidopsis thaliana] gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] ref|NP_566453.1| WD-40 repeat family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB02803.1| Score 251 E Value 1e-65 Identity 82.60% Align. Length 538bp (77.19%) Frame 1
WD domain protein-like [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108N12
Clone
Clone name
hba-108n12
LE_HBa0108N12
P108N12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found