Clone Read LE_HBa0049B02_T7_9651

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0049B02_T7_9651
Primer
T7
ID from Seq. Facility
LE_HBa_049_B02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
799 trimmed for vector and quality, 852 raw
Genbank Accession
DU028703
Sequence
>LE_HBa0049B02_T7_9651 (raw untrimmed)
TTAGATGTGGACCCGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAATTAACAAGCCTTAAAGTCCTAACCTTTTTCTGAACATTGTTTTCA
TAATGAGAATTGATCGAGTTAATTGACAGTGTCGAACCGTCAGCCACAACTTTGTTTTTCTCCTTGAATCTAGCTCTTGGAATCACCAGTTTGCTAGATA
GAGTTACCGTCATGCTGACTTGTCCTAAGCCGTAAACCCATTCCCTTAGATGATTTTTCAACTGCCTCTCTCACTAGGCCTTTCGTTAGTGGATCTTACA
GATTATCACTTGACTTTACATAGTCAATTGTGATAATTCCACTAGAGAGCAGTTGTCTTACGTTGTTATGTCTCCATCGTATATGACGAGACTTCCCGTT
GTACATAACGCTCCCTGTCCTACCTATTGCTGCTTGACTATCGCAATGTATGCTAATTGGTCCAACAGGTTTGGGCCATAATGGAATATCCTCTACGAAA
TTTTGGAGCCATTCCGCTTCTTCACCAGCCTTATCAAAAGAAATGAATTCAGATTCCATTGTGGAGCGAGCAATACATGTCTGTTTGGTCGGTTTCACAA
AGACAGCTCCTCCATCAAGTGTGAATACATAACCACTCGTGGATTTTACATCATTTGACCCAGTGATCCAATTTGCATCGCTATATACTTTAGTCGCAAC
AGTATATTTATTATAATACAAAGCATAATGTTGTGTAAATTTTAGATAATTTAACATCCGTTTCATAGACATCCAGTGAGTTTGATTCGGATTACTAGTA
CCGGCTCAGTTTACAAATAGCACATGTTATATCTGGCCGCGTGCATTTCTAN
>LE_HBa0049B02_T7_9651 (trimmed for quality and cloning vector)
AGCTTTAATTAACAAGCCTTAAAGTCCTAACCTTTTTCTGAACATTGTTTTCATAATGAGAATTGATCGAGTTAATTGACAGTGTCGAACCGTCAGCCAC
AACTTTGTTTTTCTCCTTGAATCTAGCTCTTGGAATCACCAGTTTGCTAGATAGAGTTACCGTCATGCTGACTTGTCCTAAGCCGTAAACCCATTCCCTT
AGATGATTTTTCAACTGCCTCTCTCACTAGGCCTTTCGTTAGTGGATCTTACAGATTATCACTTGACTTTACATAGTCAATTGTGATAATTCCACTAGAG
AGCAGTTGTCTTACGTTGTTATGTCTCCATCGTATATGACGAGACTTCCCGTTGTACATAACGCTCCCTGTCCTACCTATTGCTGCTTGACTATCGCAAT
GTATGCTAATTGGTCCAACAGGTTTGGGCCATAATGGAATATCCTCTACGAAATTTTGGAGCCATTCCGCTTCTTCACCAGCCTTATCAAAAGAAATGAA
TTCAGATTCCATTGTGGAGCGAGCAATACATGTCTGTTTGGTCGGTTTCACAAAGACAGCTCCTCCATCAAGTGTGAATACATAACCACTCGTGGATTTT
ACATCATTTGACCCAGTGATCCAATTTGCATCGCTATATACTTTAGTCGCAACAGTATATTTATTATAATACAAAGCATAATGTTGTGTAAATTTTAGAT
AATTTAACATCCGTTTCATAGACATCCAGTGAGTTTGATTCGGATTACTAGTACCGGCTCAGTTTACAAATAGCACATGTTATATCTGGCCGCGTGCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966598
Expected error %
0.262157
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 67 E Value 9e-12 Identity 9.10% Align. Length 437bp (54.69%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 283 E Value 9e-94 Identity 80.80% Align. Length 769bp (96.25%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89783.1| Score 269 E Value 2e-74 Identity 76.60% Align. Length 645bp (80.73%) Frame 1
putative retrovirus-related pol polyprotein-like [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0049B02
Clone
Clone name
hba-49b2
LE_HBa0049B02
C01HBa0049B02
P049B02
Clone type
BAC
Contamination
none
Estimated length
111,659
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found