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Clone Read LE_HBa0126D04_SP6_97302

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0126D04_SP6_97302
Primer
SP6
ID from Seq. Facility
LE_HBa_126_D04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 862 raw
Sequence
>LE_HBa0126D04_SP6_97302 (raw untrimmed)
AAGTTTGGAGGATACTTATAATATTCTGGATACTCTCTTCTTAGGGAGGAATGATGGCTGAACTCGGGTGCCAATAATTTATAATTGGATATCGATGGGC
ACCGGTCCGAGTTCTTACTCCATATCATTCACCTCTTTGTCTCATAAAATGACGATTTTCGCGGTATGTGTAATCTTCAGAGATGAAAAATGCATCCTAT
ACAGCATCCTCATTATCGGTTTAGTGTTTTATAGCAATAGCGATGGTATCGAAAGTCCCTTAGCAGAATATCATTCTTAGCTAGTCTTGCTGCACTTTCG
TGTGTGATTTTCTACAATATA
CCTATATCTTTGCCGGGGTACAACTCCCAGTACTGCACAAAGATTGGAGTGCAGAGCAGTAAGGTTATCGAAGCAGTCC
GTGACAGAAATAAGATAGTCGCACCGAAGCGACGGGCATGTATATGTGCCAGTGCTTTGTCGAAAGCCGCCGCCTCTTCACCTATGCATGATAGATCTTA
AAGCACCGGCGTACCCGTCTCTTTGATCCCTCTGACACCTGGCCGGATGCACGAAATTCACAAATCTAAATGTGAGTGAGGCGAAGCCCTGTAGTGCGAA
GCACTATGAGCCACTACACTCACGTCGCTGTACCCCTCCTCTTCTGTTTCTACGTTCAATGTGACTACTTTTTATCCGTTCCTAGTGTTACTCCTCCTCG
TTACAGCCAGACTTCATACTTATACCCACAAGTGATCCTGCCAGTATACTACCCCTCCACATCCGCACCTTTCTCTTTTATCTTGTGTTTGTGCTAATTT
TTCCTTTACCCTCGACATTTCCGTTTTATTTGTTTTTCTGATTAGGCTCCTTAAGTTGTTCC
>LE_HBa0126D04_SP6_97302 (trimmed for quality and cloning vector)
CC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.455
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0126D04
Clone
Clone name
hba-126d4
LE_HBa0126D04
C08HBa0126D04
P126D04
Clone type
BAC
Contamination
none
Estimated length
117,952
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found