Clone Read LE_HBa0126I02_SP6_97538

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0126I02_SP6_97538
Primer
SP6
ID from Seq. Facility
LE_HBa_126_I02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
451 trimmed for vector and quality, 843 raw
Genbank Accession
DU057719
Sequence
>LE_HBa0126I02_SP6_97538 (raw untrimmed)
AGTGCACGTCTAAGTTTAAGATTGAACGCTAACGGATAAGCTCTAGAAAAAGGGAAGACAACGGTTGTTTTCCAAACAATTTCACTTACAATATTATTTT
GCGAGGATATCTTAGGTGCCGGAAAATAAATGAAATGGTAAGTTTTATGAAGGAGATGAATGGAAGGGGCTTCTCATTTGATGCAACTACAGCTGAGTTA
CTAGTAAATGCTATTAGTGAGAATCCTTCGGTCCTTGACATGTTACCAGAACTTCACGAGGAAATCAAGAAGTGAAAATTGTTTATCGCTTGGTTTTTTC
AGCTGCAGTATGTGATACAATTTCCTTTTTATCCTTGCAAAAGGATTGACATCCAATGCAATTGCAGAAGTTGATGGCAATTAGAGCGTTGCTTGAGGTT
TCTTAAGCAGACCTACTGAGGAGGTATATTGAATTTTGATATTTTGAGTTCTATATCCGTTTTTCTTTTTCTCAATTGCACCATAAATATGAAAATAAAA
TGGTAATCTTATCGAGTTAAATATAACAATGTTGAGTTTCATTATGTTGTTTTAAGTCTAGTAATATACATTTATCAGGTGCTGTTTAATCATTGAATTC
TAATAGGAAATAATATAGTTGCCAGATTTTTGTTCTTTCCTTTTGGCCTTGTCTGGTAAAGTCATTTTGCAGCCCCTTCAAATCCCTTCATTCCCTTTGT
CAAATTTAAGAATTTGACAGTTGCTGTGGTAAAATTTAACATTCTTCTCTATGTTTTTCCCAACCCCATATTGGTAATCAGATTTTCAAAAAATCCCATT
TATGTGGATGGAAACCTCGATGACACCAGATAAGGTAGGTGAA
>LE_HBa0126I02_SP6_97538 (trimmed for quality and cloning vector)
CAACGGTTGTTTTCCAAACAATTTCACTTACAATATTATTTTGCGAGGATATCTTAGGTGCCGGAAAATAAATGAAATGGTAAGTTTTATGAAGGAGATG
AATGGAAGGGGCTTCTCATTTGATGCAACTACAGCTGAGTTACTAGTAAATGCTATTAGTGAGAATCCTTCGGTCCTTGACATGTTACCAGAACTTCACG
AGGAAATCAAGAAGTGAAAATTGTTTATCGCTTGGTTTTTTCAGCTGCAGTATGTGATACAATTTCCTTTTTATCCTTGCAAAAGGATTGACATCCAATG
CAATTGCAGAAGTTGATGGCAATTAGAGCGTTGCTTGAGGTTTCTTAAGCAGACCTACTGAGGAGGTATATTGAATTTTGATATTTTGAGTTCTATATCC
GTTTTTCTTTTTCTCAATTGCACCATAAATATGAAAATAAAATGGTAATCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94341
Expected error %
0.281872
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM52339.1| Score 91 E Value 1e-17 Identity 17.80% Align. Length 212bp (47.01%) Frame 3
fertility restorer [Petunia x hybrida]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM52341.1| Score 88 E Value 8e-17 Identity 17.40% Align. Length 212bp (47.01%) Frame 3
fertility restorer-like protein [Petunia x hybrida]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0126I02
Clone
Clone name
hba-126i2
LE_HBa0126I02
P126I02
Clone type
BAC
Contamination
none
Estimated length
80,352
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found