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Clone Read LE_HBa0141A01_SP6_99456

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0141A01_SP6_99456
Primer
SP6
ID from Seq. Facility
LE_HBa_141_A01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 930 raw
Sequence
>LE_HBa0141A01_SP6_99456 (raw untrimmed)
CAAAGACATCACAAATACAATCAAACTGCTGCGTGTGCATGGCACACCACCTCGTCCAGGCACCTGATCACANCAATTATGCGTGGAGAAGGCGAAAGAC
GAAAATGCAGTAATGTTTCTACAAAATCAAGGAACGACGAACCCTGATTTATACTTCAATACGAATTCAAATCGTCCACAACCATCTCATA
ATCGCAAGG
AGATTAGATCGGCTACACTTCTCAGGCCGGTAACCACACGCTCTCATCAACGGACTCCCGACACTGCACACAGAAAAGATTATCAGCCACAACCCACAAA
CACTACTTACTACAGGGGCACGGATACAGGCTTACCACATGATGACACTCCCGTACTGAGAGACCCACAAGCACACCCAATAGCAGCGTAACCACGTCAA
CACCTGCACTCACACCACATCTCGCTCTCTCCTCCTCCCTTCACCCCTATCCCTCCTCTACACACCTACTTCTTCCACTCCGACTCCACTAACACAAGAT
TCCATCTGTCCATCATCTTTTTATTGTTCCACACCCTATTATGCTTCGANACATTAGACTAGAAAGATACACTGCAACCAATGACTGTCCCTACCCAGAC
TCATCTGCAGACCACCACATATCCCCCCANCATAACAACCACATGTACGACCAATCCCTCTAAACAAGTCTACAGCGCGGCACACACATCTATCTAACAA
CTCCGACACTCATTCTAGATATTGAACCTGATACACATATCAGTACTCTGCTAGCTCCTTCCTTCTCAACACGCACACTAACGTCACCACACTAGAACGA
CCACACACAACCGTACCTCTCTGCCTCGCCTTATCCTCTCCATTCCTTCGCTGAAATCTCTTCACCTCTTCTCCCTACACTCTACTTCACTTGCTCCGCC
CTCGCCCCCCCTCCCGTGCGCGCCCCACCC
>LE_HBa0141A01_SP6_99456 (trimmed for quality and cloning vector)
ATCG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.568674
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0141A01
Clone
Clone name
hba-141a1
LE_HBa0141A01
P141A01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found